FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1610.ptfa, 554 aa
 vs ./tmplib.26680 library

1768463 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.0677+/-0.0065; mu= 0.0009+/- 0.432
 mean_var=221.7132+/-52.988, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.0861

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1193  ( 524 res)   mej02325                   ( 524)  866  120 3.8e-28


>>mKIAA1193  ( 524 res)   mej02325                        (524 aa)
 initn: 927 init1: 688 opt: 866  Z-score: 597.7  bits: 120.3 E(): 3.8e-28
Smith-Waterman score: 949;  45.042% identity (47.321% ungapped) in 353 aa overlap (51-400:23-361)

               30        40        50        60        70        80
mKIAA1 AENVHQMFMFNWFTDCLWILFLSNYKPSVESSSPGGSATSEDHEFDPSADMLVHDFDDER
                                     .::   :  : ::.:.  :..:..... ..
mKIAA1         GRPHWCLSRPISTQIPHPAYLLNSSTVVSMGSADHQFN-LAELLTQNYNLQE
                       10        20        30         40        50 

               90       100       110       120       130       140
mKIAA1 TLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTVRLPEEEEEEEEEEEGEDD
          :  .   . .   . . . . .:::. :::.::::.:.  . :.: :  .   .  :
mKIAA1 GCAEAPQCPDKPEEELDKDFIDQSSDMPLDELLALYGYESSDPISEQESEGGDTAPALPD
              60        70        80        90       100       110 

              150       160       170       180       190          
mKIAA1 EDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVTSQDAQEIIRPRRCKYF--
          :.  ..  :::           .:.::::: :: . ::::..:..... .  . :  
mKIAA1 MTLDKIAKDLLSGE-----------EEEETQSSADDLTPSVTSHEASDLFHNQSGSRFLA
             120                  130       140       150       160

       200       210       220       230       240       250       
mKIAA1 -DTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGVCRYKENEKVYENDDQLLWD
        :..      :. .:: .:..  ::::::: .:::.. . .   .. .:.:::.:::::.
mKIAA1 GDNGPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNI-LHLNRHCDKIYENEDQLLWS
              170       180       190        200       210         

       260       270       280       290       300       310       
mKIAA1 PECLPEEKVVVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCSFDTEEALRRLR
       :  :::..:  ::  : .:  .: .   ::::  .::.::::::::::.:..::::::::
mKIAA1 PSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLR
     220       230       240       250       260       270         

       320       330       340       350       360       370       
mKIAA1 FNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSER
       ::::. :. : .:.::::::::.:....::.:::::::::::::::::: .::.::::::
mKIAA1 FNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSER
     280       290       300       310       320       330         

       380       390       400       410       420       430       
mKIAA1 YDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDG
       ::.::::::.:..:. .  :.::                                     
mKIAA1 YDYFAQQTRLGRRKF-VSSGTTDTEQDLDGLDPDGHARLHSENVDIEAGGLDQPGVGSDD
     340       350        360       370       380       390        




554 residues in 1 query   sequences
1768463 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:49:28 2006 done: Mon Mar 27 10:49:29 2006
 Scan time:  0.750 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]