FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0103.ptfa, 297 aa
 vs ./tmplib.26680 library

1768720 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.3194+/-0.00412; mu= 14.4387+/- 0.275
 mean_var=81.7105+/-19.132, 0's: 0 Z-trim: 5  B-trim: 42 in 1/35
 Lambda= 0.1419

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1140  ( 926 res)   mfj22197                   ( 926)  149   40 0.00041
mKIAA4150  ( 1022 res)   mfj20071                  (1022)  129   36  0.0074


>>mKIAA1140  ( 926 res)   mfj22197                        (926 aa)
 initn: 146 init1: 121 opt: 149  Z-score: 166.2  bits: 40.4 E(): 0.00041
Smith-Waterman score: 154;  21.818% identity (24.793% ungapped) in 275 aa overlap (39-297:656-913)

       10        20        30        40        50        60        
mKIAA0 DVTWEEMRDKMRKWREENSRNSEQIMEVGEELINDYASKLGDDIWIIYEQVMIAALDYGR
                                     ..::   ..  ... ... .: .  .  : 
mKIAA1 EALTMCRDDANALHLLALLFSAQKYYQHALDVINMAITEHPENFNLMFTKVKLEQVLKGP
         630       640       650       660       670       680     

       70        80        90           100        110       120   
mKIAA0 DDLALFCLQELRRQFPGSHRVKRLTGMR----FEAME-RYDDAIQLYDRILQEDPTNTAA
       ..  . : : ::  .   .  ..: :..    ::..  . ...:.:    : .     ..
mKIAA1 EEALVTCRQMLR-LWQTLYNFSQLGGLEKDGSFEGLTVKKQNGIHL---TLPDAHDADSG
         690        700       710       720       730          740 

           130       140          150            160       170     
mKIAA0 RKRKIAIRKAQGKTVEAIREL---NEYLEQ-----FVGDQEAWHELAELYINEHDYAKAA
        .:  .:  : ..  ::. ::   .  :.:     ..  .. : . :::......  .:.
mKIAA1 SRRASSI--AASRLEEAMSELTLTTSVLKQGPMQLWTTLEQIWLQAAELFMEQRQLKEAG
               750       760       770       780       790         

         180         190        200       210       220       230  
mKIAA0 FCLEELMMTNPHNH--LYCQ-QYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGL
       ::..:     : .:  :: . . ::::   :..:.   ... . .:: .:  ..: . .:
mKIAA1 FCIQEAAGLFPTSHSVLYMRGRLAEVK---GSFEE---AKQLYKEALTVNPDGVRIMHSL
     800       810       820          830          840       850   

            240       250       260       270       280       290  
mKIAA0 YMSASHIASNPKASAKMKKDNIKYASWAANQINRAYQFAGRSKKETKYSLKAVEDMLETL
        .  :... .  :. :. .: ..  :     ...:.:  :.  ..   .  ::. .: .:
mKIAA1 GLMLSQLGHKSLAQ-KVLRDAVERQS----TFHEAWQGLGEVLQDQGQNEAAVDCFLTAL
           860        870           880       890       900        

                         
mKIAA0 QITQS             
       ..  :             
mKIAA1 ELEASSPVLPFSIIAREL
      910       920      

>>mKIAA4150  ( 1022 res)   mfj20071                       (1022 aa)
 initn: 101 init1:  59 opt: 129  Z-score: 143.6  bits: 36.4 E(): 0.0074
Smith-Waterman score: 143;  21.356% identity (23.954% ungapped) in 295 aa overlap (10-290:194-470)

                                    10        20        30         
mKIAA0                      MAKVTERYDVTWEEMRDKMRKWREENSRNSEQIMEVGEE
                                     :: ... . ... ...:. . .:.    :.
mKIAA4 YINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQL----EK
           170       180       190       200       210             

      40        50        60             70          80          90
mKIAA0 LINDYASKLGDDIWIIYEQVMIAALDYG-----RDDL--ALFCLQELRRQFPGSHR--VK
         .:: .::. .   . ::...     :     . .:  ::   :.  ::  :  .  ..
mKIAA4 EKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLAS
     220       230       240       250       260       270         

                100       110       120       130          140     
mKIAA0 RLTG--MRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIR---KAQGKTVEAIRELN
       :: .  .:   .::  ....  ..  : :  :    :.. :..     ..:. : .:. :
mKIAA4 RLQSSRQRVGELERTLSTVSTQQK--QADRYNKDLTKERDALKLELYKNSKSNEDLRQQN
     280       290       300         310       320       330       

         150       160       170       180       190       200     
mKIAA0 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL
         ::.            .: .   . : : . .:::.     ..:  ::..  . . :: 
mKIAA4 SELEE------------KLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGN
       340                   350       360       370       380     

         210       220       230       240       250       260     
mKIAA0 ENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKMKKDNIKYASWAANQIN
       :.:. . .  ::     .. :..:  : .  .. : : :. . : .. ..  .  .. ..
mKIAA4 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLK
         390       400       410       420       430       440     

         270       280       290                                   
mKIAA0 RAYQFAGRSKKETKYSLKAVEDMLETLQITQS                            
       .  .   :. .: . :: :.....:                                   
mKIAA4 EEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQ
         450       460       470       480       490       500     




297 residues in 1 query   sequences
1768720 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:12:20 2006 done: Mon Mar 27 10:12:20 2006
 Scan time:  0.490 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]