FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0293.ptfa, 84 aa
 vs ./tmplib.26680 library

1768933 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.4626+/-0.00591; mu= -8.2567+/- 0.396
 mean_var=198.8477+/-45.417, 0's: 0 Z-trim: 1  B-trim: 0 in 0/35
 Lambda= 0.0910

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4047  ( 1506 res)   mpm11085                  (1506)  185   35  0.0079


>>mKIAA4047  ( 1506 res)   mpm11085                       (1506 aa)
 initn: 258 init1: 139 opt: 185  Z-score: 143.1  bits: 35.0 E(): 0.0079
Smith-Waterman score: 185;  50.649% identity (56.522% ungapped) in 77 aa overlap (10-84:1436-1506)

                                    10        20        30         
mKIAA0                      SPDLTTCVSPAPSSSAPISPSLPGAPPAKVPST--SPTG
                                     ::  :::  : : :.  ::. ::.  :  :
mKIAA4 LAAPAAGEDAATSATAPATATEAPGAARAGPAERSSALPSTSAPANAPARRPSSLQSLFG
        1410      1420      1430      1440      1450      1460     

        40        50        60        70        80    
mKIAA0 DTAAALHPSTKVNPNLQRRHEKMANLNSIIYRLERAANREEVLEWEF
          ::   ... ::    :..: :::::::.:::.::.::: .::::
mKIAA4 LPEAA---GARDNPV---RKKKAANLNSIIHRLEKAASREEPIEWEF
        1470            1480      1490      1500      




84 residues in 1 query   sequences
1768933 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:46 2006 done: Mon Mar 27 10:16:46 2006
 Scan time:  0.280 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]