FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0098.ptfa, 542 aa
 vs ./tmplib.26680 library

1768475 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 2.9923+/-0.00391; mu= 25.3057+/- 0.262
 mean_var=80.9224+/-17.899, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1426

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0002  ( 555 res)   mpj03039                   ( 555)  810  177 4.7e-45


>>mKIAA0002  ( 555 res)   mpj03039                        (555 aa)
 initn: 707 init1: 322 opt: 810  Z-score: 901.3  bits: 176.5 E(): 4.7e-45
Smith-Waterman score: 810;  31.346% identity (32.535% ungapped) in 520 aa overlap (23-534:23-531)

               10        20        30         40        50         
mKIAA0 TMASVGTLAFDEYGRPFLIIKDQDRKSRLMGLE-ALKSHIMAAKAVANTMRTSLGPNGLD
                             .:  ... ::: :.  .:.: : .:.: ::. ::::..
mKIAA0 AVDCGRAMALHVPKAPGFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMN
               10        20        30        40        50        60

      60        70        80        90       100       110         
mKIAA0 KMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLE
       ::....   . .:::.::::  ..:.:  ::..:  :. :..:.::::. :.:.::::::
mKIAA0 KMVINRLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLE
               70        80        90       100       110       120

     120       130       140       150          160       170      
mKIAA0 EAEQLLDRGIHPIRIADGYEQAARIAIQHLDKI---SDKVLVDINNPEPLIQTAKTTLGS
        ::.::  :.   .. .::: : . : . : ..   : : : :...   :.   .:.. :
mKIAA0 LAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCSAKNLRDVDEVSSLL---RTSIMS
              130       140       150       160       170          

        180       190        200       210       220       230     
mKIAA0 KVINSCHRQMAEIAVNAVLTV-ADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDF
       :  .: .  .:.. ..: ...  :    .::   :.:   .:. . ......:..  :. 
mKIAA0 KQYGS-ETFLAKLIAQACVSIFPDSGNFNVDN--IRVCKILGSGIYSSSVLHGMVFKKET
       180        190       200         210       220       230    

         240       250       260       270       280       290     
mKIAA0 SHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKE
              :  :::::. .:::.    .::  . . ..:.   ..: :.. .. ..: :  
mKIAA0 EGDVTSVK--DAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAG
          240         250       260       270       280       290  

         300       310       320       330       340       350     
mKIAA0 TGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLG
       ::::. .      : : :   . ..  ::  .  ... .  ..:.  .:...  ..:..:
mKIAA0 TGANVIVTGGKVADIALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMG
            300       310       320       330       340       350  

         360       370       380        390       400       410    
mKIAA0 FAGVVQEISFGTTKDKMLVIEKCKNSRAV-TIFIRGGNKMIIEEAKRSLHDALCVIRNLI
           :     : :.  ..:... :.. :. :: .::..  .... .:.. :.. ... : 
mKIAA0 HCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLT
            360         370       380       390       400       410

          420       430       440       450       460       470    
mKIAA0 RDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQT
       ::.:.: ::::.::  :  ... .. :: :::::.. ::.:.:.:: ::.::::..  ..
mKIAA0 RDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEV
              420       430       440       450       460       470

          480       490         500       510       520       530  
mKIAA0 MTEVRARQVKESNPALGIDCLHK--GSNDMQYQHVIETLIGKKQQISLATQMVRMILKID
       .... . . .:.:  .:.:   .  . .::    ...: .::   :.:::. .  .:..:
mKIAA0 ISKLYSVH-QEGNKNVGLDIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVD
               480       490       500       510       520         

            540                  
mKIAA0 DIRKPGESEE                
       .:                        
mKIAA0 QIIMAKPAGGPKPPSGKKDWDDDQND
     530       540       550     




542 residues in 1 query   sequences
1768475 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:12:13 2006 done: Mon Mar 27 10:12:14 2006
 Scan time:  0.770 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]