FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1488.ptfa, 425 aa vs ./tmplib.26680 library 1768592 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.6806+/-0.00584; mu= 5.3536+/- 0.388 mean_var=190.8753+/-44.920, 0's: 0 Z-trim: 8 B-trim: 2 in 1/35 Lambda= 0.0928 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4209 ( 1417 res) mfj00137 (1417) 724 110 1.2e-24 mKIAA0890 ( 1057 res) mbg06494 (1057) 677 103 7.6e-23 mKIAA0224 ( 1224 res) mpg04132 (1224) 510 81 4.5e-16 mKIAA0577 ( 1048 res) mbg07362a (1048) 495 79 1.7e-15 mKIAA4096 ( 1264 res) mfj04296 (1264) 484 78 5.1e-15 mKIAA0134 ( 1167 res) mbh02208 (1167) 371 62 1.8e-10 mKIAA1517 ( 937 res) mbp07073 ( 937) 360 61 4.3e-10 >>mKIAA4209 ( 1417 res) mfj00137 (1417 aa) initn: 951 init1: 373 opt: 724 Z-score: 535.1 bits: 109.8 E(): 1.2e-24 Smith-Waterman score: 725; 39.818% identity (41.720% ungapped) in 329 aa overlap (88-404:447-772) 60 70 80 90 100 mKIAA1 IGLWYAKKQTQKNKEAERQERAVVHMDERREEQIVQLLNSVQAKTDKD--------SEAQ : .::.::. .: : . ::.. mKIAA4 HISEFLYGKALEFAKTSEPVVYSLITLLEEESEIVKLLTHTQHKYSVPPVNVPPVPSETR 420 430 440 450 460 470 110 120 130 140 150 160 mKIAA1 ISWFAPEDHGYGTEVS-SEKKINSEKKLDNQEKKLLNQEKKTFRITDKSYIDRDTEYLLQ :: : . ... :.. ...:. . .: .. .. . ..::.. . . mKIAA4 ISKPAYRKPVVPSNTFLSNQMLEGERLSELEEDADEDEGPASIIVENESYVNLKKRSYKR 480 490 500 510 520 530 170 180 190 200 210 220 mKIAA1 ENEPNLSL---DQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVIS ..: :: .... ...: :... .. . . :. ::.. .. ...:...:::.::: mKIAA4 YDRPAKSLFAENSKICRQFQMKQASRQFHAILQERQLLPAWEERETILKLLSKHQVVVIS 540 550 560 570 580 590 230 240 250 260 270 280 mKIAA1 GETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNGNS : ::::::::. :::::: .. . :.::::::::::::::::: :::: : . mKIAA4 GMTGCGKTTQIPQFILDNSLNGPPERVANIICTQPRRISAISVAERVAKERAERVGL--T 600 610 620 630 640 650 290 300 310 320 330 340 mKIAA1 TGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTV .::::::.: . . .::::::..:. :..:. :..:.::..::.:::. .:: :. : mKIAA4 VGYQIRLES-VKSSATRLLYCTTGVLLRRLEGDATLQGVTHIIVDEVHERTEESDFLLLV 660 670 680 690 700 710 350 360 370 380 390 400 mKIAA1 IKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVP .::.. :. :.::::::::.: ::.::. ::.: ::: .::: ...::: . ::: mKIAA4 LKDIVMQRATLQVILMSATLDAGLFSKYFSYCPVITIPGRAFPVDQFFLEDALAVTRYVL 720 730 740 750 760 770 410 420 mKIAA1 DQKEHRSQFKRGFMQGHVNR mKIAA4 QDGSPYMRSMKQIAKEKLKARHNRTAQEEVEEDLRLSLHLQDEEESVKDTIPDQQLDFKQ 780 790 800 810 820 830 >>mKIAA0890 ( 1057 res) mbg06494 (1057 aa) initn: 690 init1: 398 opt: 677 Z-score: 502.5 bits: 103.3 E(): 7.6e-23 Smith-Waterman score: 682; 35.561% identity (39.349% ungapped) in 374 aa overlap (46-411:318-663) 20 30 40 50 60 70 mKIAA1 DGGPRGSGQGSSGGGGGSRGSGGGGGGRGGRGRHPAHLKGREIGLWYAKKQTQKNKEAER .::. :. ... .: : :. .. ..: mKIAA0 KNLMQFHTVGTKTKLATLTLLWPCPMTFVAKGRRKAEAENKAAAL--ACKKLKSLGLVDR 290 300 310 320 330 340 80 90 100 110 120 mKIAA1 QERAVVH-------MDERREEQIVQLLNSVQAKTDKDSEAQISWFAPEDHGYGTEVSSEK ... ..: . : : : .: . :: .: . : : .. .: : mKIAA0 NNEPLTHAMYNLASLRELGETQRRPCTIQVPEPILRKIEAFLSHY-PVDSSW---ISPEL 350 360 370 380 390 400 130 140 150 160 170 180 mKIAA1 KINSEKKLD-NQEKKLLNQEKKTFRITDKSYIDRDTEYLLQENEPNLSLDQHLLEDLQRK ...:. : .... :.. :: : :. :.: : .. :.: ::: : :. mKIAA0 RLQSDDILPLGKDSGPLSDP-----ITGKPYMP------LSEAE-EVRLSQSLLE-LWRR 410 420 430 440 190 200 210 220 230 240 mKIAA1 KTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILDNYIER . : . : .:: . ... :..: :.::::.:::::::.. :..:. :. . mKIAA0 R-GPIWQEAP----QLPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTE 450 460 470 480 490 500 250 260 270 280 290 300 mKIAA1 GKGSACRIVCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGSILYCT :.:. : .. ::::::::.:::.::. : . : ..:.:.::.:. : . :..:.:: mKIAA0 GRGARCNVIITQPRRISAVSVAQRVSHELGPSLRR--NVGFQVRLESKPPARGGALLFCT 510 520 530 540 550 560 310 320 330 340 350 360 mKIAA1 TGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNA .::.:. :::. : .:::...::.:::....: :. ..: : .. :...::::: . mKIAA0 VGILLRKLQSNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDN 570 580 590 600 610 620 370 380 390 400 410 420 mKIAA1 EKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPDQKEHRSQFKRGFMQGHVNR :.::.:::.::.:..::: .:: :. ::::. :. : :: mKIAA0 ERFSRYFGGCPVIKVPGFMYPVKEHYLEDILAKLG--KHQYPHRHWHHESEDECALDLDL 630 640 650 660 670 mKIAA0 VTDLVLHIDARGEPGGCFLPPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVND 680 690 700 710 720 730 >>mKIAA0224 ( 1224 res) mpg04132 (1224 aa) initn: 527 init1: 285 opt: 510 Z-score: 380.9 bits: 81.0 E(): 4.5e-16 Smith-Waterman score: 511; 37.805% identity (41.150% ungapped) in 246 aa overlap (146-389:488-715) 120 130 140 150 160 170 mKIAA1 EDHGYGTEVSSEKKINSEKKLDNQEKKLLNQEKKTFRITDKSYIDRDTEYLLQENEPNLS .:. .:. . .: :: :. ... mKIAA0 HREQKERRKAQHKHWELAGTKLGDIMGVKKEEEPDKAMTEDGKVDYRTE---QKFADHMK 460 470 480 490 500 510 180 190 200 210 220 230 mKIAA1 LDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTTQ .. .. .::. .:. :. :: ...:.::...: ....... :::: ::::: mKIAA0 EKSEASSEFAKKKS---ILEQ---RQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQ 520 530 540 550 560 240 250 260 270 280 290 mKIAA1 VTQFIL-DNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGN-GNSTGYQIRLQ .::.. :.: . : : ::::::..:.:::.::. : . :: :. .:: ::.. mKIAA0 LTQYLHEDGYTDYGM-----IGCTQPRRVAAMSVAKRVSEEMG---GNLGEEVGYAIRFE 570 580 590 600 610 620 300 310 320 330 340 350 mKIAA1 SRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFR . .. : : : ::.:. .. :. : ...:: :::.:..:::. ...... : mKIAA0 D-CTSENTLIKYMTDGILLRESLREADLDHYSAVIMDEAHERSLNTDVLFGLLREVVARR 630 640 650 660 670 360 370 380 390 400 410 mKIAA1 SDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPDQKEHRSQ ::::.:. :::..::::. .::: :..:::: :::: mKIAA0 SDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVH 680 690 700 710 720 730 420 mKIAA1 FKRGFMQGHVNR mKIAA0 LSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAP 740 750 760 770 780 790 >>mKIAA0577 ( 1048 res) mbg07362a (1048 aa) initn: 524 init1: 239 opt: 495 Z-score: 370.8 bits: 79.0 E(): 1.7e-15 Smith-Waterman score: 511; 32.326% identity (36.149% ungapped) in 331 aa overlap (56-384:312-609) 30 40 50 60 70 80 mKIAA1 SSGGGGGSRGSGGGGGGRGGRGRHPAHLKGREIGLWYAKKQTQKNKEAERQERAVVHMDE :... : :.. :: . :: . mKIAA0 EAELADEEVLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR----YHMPK 290 300 310 320 330 90 100 110 120 130 140 mKIAA1 RREEQIVQLLNSVQAKTDKDSEAQISWFAPEDHGYGTEVSSEKKINSEKKLDNQEKKLLN . . : .. .. :. .. .: : : :. :. .: : . .. . .:. mKIAA0 ETRGQPARTVDIVEEESGAPGEEQRRW---EEAQLGA--ASLKFGARDAAAQEAKYQLVL 340 350 360 370 380 390 150 160 170 180 190 200 mKIAA1 QEKKTFRITDKSYIDRDTEYLLQENEPNLSLDQHLLEDLQRKKTDPRYIEMQRFRKKLPS .: .:.... . .. : : . : :: . :.:.. .: :..:: mKIAA0 EEDETIEFVRAAQLQGDEE----PSGPPLSAQA------QQKES------IQAVRRSLPV 400 410 420 430 210 220 230 240 250 260 mKIAA1 YGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILDN-YIERGKGSACRIVCTQPRRIS . ...::. : :::: .: :::: :::::. :..... : ..: .:.::::::.. mKIAA0 FPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTKKGM----KIACTQPRRVA 440 450 460 470 480 490 270 280 290 300 310 320 mKIAA1 AISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGSIL-YCTTGIILQWLQSDSRLSS :.::: ::: : . . :: .::.::... .. ..: : : :..:. . :. :.: mKIAA0 AMSVAARVAREMGVKLGN--EVGYSIRFEDCTSER--TVLRYMTDGMLLREFLSEPDLAS 500 510 520 530 540 330 340 350 360 370 380 mKIAA1 VSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIP : ...:: :::.:..:.:. .:::. .:: .:::.. ::::.. .:: .: . :...:: mKIAA0 YSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTARFSAFFDDAPVFRIP 550 560 570 580 590 600 390 400 410 420 mKIAA1 GFTFPVVEYLLEDIIEKIRYVPDQKEHRSQFKRGFMQGHVNR : mKIAA0 GRRTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQ 610 620 630 640 650 660 >>mKIAA4096 ( 1264 res) mfj04296 (1264 aa) initn: 425 init1: 222 opt: 484 Z-score: 361.9 bits: 77.6 E(): 5.1e-15 Smith-Waterman score: 488; 41.667% identity (44.271% ungapped) in 204 aa overlap (187-389:596-788) 160 170 180 190 200 210 mKIAA1 SYIDRDTEYLLQENEPNLSLDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLI :::. .:. :..:: : ....::. . mKIAA4 AANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQMSILEQ---RESLPIYKLKEQLVQAV 570 580 590 600 610 620 220 230 240 250 260 270 mKIAA1 NNHQVTVISGETGCGKTTQVTQFILD-NYIERGKGSACRIVCTQPRRISAISVAERVATE ...:. .. :::: :::::.::.. . .: ::: : ::::::..:.:::.::. : mKIAA4 HDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-----IGCTQPRRVAAMSVAKRVSEE 630 640 650 660 670 280 290 300 310 320 330 mKIAA1 RAESCGNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHER . : :. .:: ::... . : : : :..:. : :.. . :.::: ::: mKIAA4 FG--CCLGQEVGYTIRFED-CTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHER 680 690 700 710 720 730 340 350 360 370 380 390 mKIAA1 NLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLE ....:::. ..: .. :.:.:.:. ::::.: :::.:: . :.. ::: :.:: mKIAA4 TIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTK 740 750 760 770 780 790 400 410 420 mKIAA1 DIIEKIRYVPDQKEHRSQFKRGFMQGHVNR mKIAA4 EPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIIL 800 810 820 830 840 850 >>mKIAA0134 ( 1167 res) mbh02208 (1167 aa) initn: 464 init1: 223 opt: 371 Z-score: 280.5 bits: 62.4 E(): 1.8e-10 Smith-Waterman score: 515; 40.566% identity (43.216% ungapped) in 212 aa overlap (179-389:163-362) 150 160 170 180 190 200 mKIAA1 KTFRITDKSYIDRDTEYLLQENEPNLSLDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGM : : :.:.:.. : ..:: : :: . mKIAA0 SILSPDTRGRHGPGRGLPPERVSEFRRALLHYL-DFQQKQAFGRLAKLQRERAALPIAQY 140 150 160 170 180 190 210 220 230 240 250 260 mKIAA1 QKELVNLINNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISV ..... ...:::.:..:.:::::.::: :..: . : . ...:::::::. ::. mKIAA0 GNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLL------AAGFS-HVACTQPRRIACISL 200 210 220 230 240 270 280 290 300 310 320 mKIAA1 AERVATERAESCGNGNSTGYQIRLQSRLPRKQGS-ILYCTTGIILQWLQSDSRLSSVSHI :.::. : . :...:::::..: :. .. :.. :.:..:. .: . : . . . mKIAA0 AKRVGFESLSQ--YGSQVGYQIRFEST--RSAATKIVFLTVGLLLRQIQREPSLPQYQVL 250 260 270 280 290 300 330 340 350 360 370 380 mKIAA1 VLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTF ..::.:::.:..: :. :.. :: : ::::::::::.: :: ::.. :....:: : mKIAA0 IVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSHAPVVQVPGRLF 310 320 330 340 350 360 390 400 410 420 mKIAA1 PVVEYLLEDIIEKIRYVPDQKEHRSQFKRGFMQGHVNR :.. mKIAA0 PITVVYQPQEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGMAEITTVLD 370 380 390 400 410 420 >>mKIAA1517 ( 937 res) mbp07073 (937 aa) initn: 299 init1: 142 opt: 360 Z-score: 273.6 bits: 60.8 E(): 4.3e-10 Smith-Waterman score: 360; 32.850% identity (35.789% ungapped) in 207 aa overlap (192-389:24-222) 170 180 190 200 210 220 mKIAA1 DTEYLLQENEPNLSLDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQV : :::. : ::: . .. ... . .: . mKIAA1 PPKTPASAPPPPVAKPAVFIPVNRTPEMQEERLKLPILAEEQAIMEAVAEHPI 10 20 30 40 50 230 240 250 260 270 280 mKIAA1 TVISGETGCGKTTQVTQFILDNYIERGKGSACRIV-CTQPRRISAISVAERVATERAESC ... :::: :::::: ::. : : .: :. :.:::..:.....::: : : mKIAA1 VIVCGETGSGKTTQVPQFLY----EAGYSSEDSIIGVTEPRRVAAVAMSQRVAKEMNLS- 60 70 80 90 100 290 300 310 320 330 340 mKIAA1 GNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSD ..:::: .. . .. : . : :..:. .:.: : . . ...:: :::.. .: mKIAA1 --HRVVSYQIRYEGNVT-EETRIKFMTDGVLLKEIQKDFLLLKYKVVIIDEAHERSVYTD 110 120 130 140 150 160 350 360 370 380 390 mKIAA1 VLMTVIKDLLHFRSD----LKVILMSATLNAEKFSE----YFGNCPMIHIPGFTFPVVEY .:. ... .. .:. ::...::::: .: :.. . :.:.. . :::. mKIAA1 ILLGLLSRIVALRAKRHLPLKLLIMSATLRVEDFTQNQRLFTTPPPVIKVESRQFPVTVH 170 180 190 200 210 220 400 410 420 mKIAA1 LLEDIIEKIRYVPDQKEHRSQFKRGFMQGHVNR mKIAA1 FNKRTPLDDYSGECFRKVCKIHRMLPAGGILVFLTGQAEVHALCRRLRKAFPFRCSQPQE 230 240 250 260 270 280 425 residues in 1 query sequences 1768592 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:46:25 2006 done: Mon Mar 27 10:46:26 2006 Scan time: 0.660 Display time: 0.140 Function used was FASTA [version 3.4t11 Apr 17, 2002]