# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpk03164.fasta.nr -Q ../query/mFLJ00124.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mFLJ00124, 285 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7920908 sequences
Expectation_n fit: rho(ln(x))= 5.0994+/-0.000184; mu= 9.9611+/- 0.010
mean_var=70.2435+/-13.679, 0's: 43 Z-trim: 46 B-trim: 351 in 1/65
Lambda= 0.153028
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|52783324|sp|Q9EQI8.1|RM46_MOUSE RecName: Full=3 ( 283) 1881 423.9 1.6e-116
gi|81883364|sp|Q5RK00.1|RM46_RAT RecName: Full=39S ( 277) 1762 397.6 1.3e-108
gi|114658725|ref|XP_510572.2| PREDICTED: mitochond ( 279) 1519 343.9 1.8e-92
gi|52783325|sp|Q9H2W6.1|RM46_HUMAN RecName: Full=3 ( 279) 1513 342.6 4.6e-92
gi|194206313|ref|XP_001916683.1| PREDICTED: simila ( 280) 1510 341.9 7.4e-92
gi|109082282|ref|XP_001088970.1| PREDICTED: simila ( 279) 1505 340.8 1.6e-91
gi|73951430|ref|XP_536185.2| PREDICTED: similar to ( 280) 1499 339.5 4e-91
gi|75042083|sp|Q5RBU2.1|RM46_PONAB RecName: Full=3 ( 279) 1486 336.6 2.9e-90
gi|122146150|sp|Q3SZ22.1|RM46_BOVIN RecName: Full= ( 277) 1465 332.0 7.1e-89
gi|11275665|gb|AAG33698.1| P2ECSL [Homo sapiens] ( 210) 1181 269.2 4.3e-70
gi|114658727|ref|XP_001164394.1| PREDICTED: simila ( 206) 1161 264.8 9e-69
gi|12839506|dbj|BAB24577.1| unnamed protein produc ( 163) 1087 248.4 6.2e-64
gi|119622402|gb|EAX01997.1| mitochondrial ribosoma ( 203) 1045 239.2 4.6e-61
gi|109082284|ref|XP_001088632.1| PREDICTED: simila ( 205) 1018 233.2 2.9e-59
gi|50753105|ref|XP_413872.1| PREDICTED: similar to ( 286) 989 226.9 3.2e-57
gi|138519789|gb|AAI35282.1| LOC100125128 protein [ ( 278) 987 226.5 4.2e-57
gi|224121302|ref|XP_002187876.1| PREDICTED: mitoch ( 325) 959 220.3 3.4e-55
gi|224062692|ref|XP_002197666.1| PREDICTED: mitoch ( 331) 959 220.3 3.5e-55
gi|119622401|gb|EAX01996.1| mitochondrial ribosoma ( 152) 867 199.8 2.5e-49
gi|119622403|gb|EAX01998.1| mitochondrial ribosoma ( 173) 817 188.8 5.7e-46
gi|49901212|gb|AAH76280.1| Zgc:92810 [Danio rerio] ( 286) 800 185.2 1.1e-44
gi|55251026|emb|CAH69071.1| novel protein similar ( 286) 796 184.3 2.1e-44
gi|209738022|gb|ACI69880.1| 39S ribosomal protein ( 293) 770 178.6 1.2e-42
gi|47220892|emb|CAG03099.1| unnamed protein produc ( 290) 765 177.5 2.5e-42
gi|210096495|gb|EEA44639.1| hypothetical protein B ( 239) 683 159.3 5.9e-37
gi|210119175|gb|EEA66902.1| hypothetical protein B ( 239) 673 157.1 2.7e-36
gi|193610512|ref|XP_001944243.1| PREDICTED: simila ( 269) 658 153.8 3e-35
gi|18676454|dbj|BAB84879.1| FLJ00124 protein [Homo ( 118) 631 147.6 9.8e-34
gi|116127281|gb|EAA11413.3| AGAP006684-PA [Anophel ( 271) 589 138.6 1.2e-30
gi|108874035|gb|EAT38260.1| mitochondrial ribosoma ( 267) 588 138.4 1.3e-30
gi|72006769|ref|XP_782274.1| PREDICTED: hypothetic ( 306) 585 137.8 2.4e-30
gi|167877783|gb|EDS41166.1| mitochondrial ribosoma ( 272) 567 133.7 3.4e-29
gi|91077572|ref|XP_972780.1| PREDICTED: similar to ( 255) 551 130.2 3.7e-28
gi|48143341|ref|XP_397424.1| PREDICTED: similar to ( 269) 547 129.3 7.1e-28
gi|215259959|gb|ACJ64464.1| mitochondrial ribosoma ( 236) 546 129.1 7.5e-28
gi|194128074|gb|EDW50117.1| GM14444 [Drosophila se ( 258) 526 124.7 1.7e-26
gi|7292156|gb|AAF47568.1| mitochondrial ribosomal ( 258) 523 124.0 2.7e-26
gi|190652983|gb|EDV50226.1| GG14823 [Drosophila er ( 258) 521 123.6 3.7e-26
gi|194179294|gb|EDW92905.1| GE21186 [Drosophila ya ( 258) 518 122.9 5.8e-26
gi|190623242|gb|EDV38766.1| GF24835 [Drosophila an ( 258) 506 120.3 3.7e-25
gi|194161955|gb|EDW76856.1| GK16633 [Drosophila wi ( 261) 506 120.3 3.7e-25
gi|194111073|gb|EDW33116.1| GL16054 [Drosophila pe ( 261) 498 118.5 1.3e-24
gi|54641160|gb|EAL29910.1| GA12628 [Drosophila pse ( 261) 496 118.1 1.7e-24
gi|193896680|gb|EDV95546.1| GH15718 [Drosophila gr ( 263) 489 116.5 5e-24
gi|193918753|gb|EDW17620.1| GI12544 [Drosophila mo ( 262) 478 114.1 2.7e-23
gi|190585852|gb|EDV25920.1| hypothetical protein T ( 304) 437 105.1 1.6e-20
gi|198427074|ref|XP_002129519.1| PREDICTED: simila ( 297) 409 98.9 1.1e-18
gi|215503571|gb|EEC13065.1| 39S ribosomal protein ( 301) 397 96.2 7.2e-18
gi|149622111|ref|XP_001521611.1| PREDICTED: hypoth ( 83) 376 91.2 6.6e-17
gi|212515539|gb|EEB17671.1| mitochondrial 50S ribo ( 162) 378 91.9 8.2e-17
>>gi|52783324|sp|Q9EQI8.1|RM46_MOUSE RecName: Full=39S r (283 aa)
initn: 1881 init1: 1881 opt: 1881 Z-score: 2248.1 bits: 423.9 E(): 1.6e-116
Smith-Waterman score: 1881; 100.000% identity (100.000% similar) in 283 aa overlap (3-285:1-283)
10 20 30 40 50 60
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGSSRGLSLEAASSSSRSPWRLSGALCLQRPPLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|527 MAAPVGRTLLGLARGWRQLDRFWAGSSRGLSLEAASSSSRSPWRLSGALCLQRPPLIT
10 20 30 40 50
70 80 90 100 110 120
mFLJ00 KALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|527 KALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQDL
60 70 80 90 100 110
130 140 150 160 170 180
mFLJ00 EDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEWQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|527 EDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEWQP
120 130 140 150 160 170
190 200 210 220 230 240
mFLJ00 GETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|527 GETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLT
180 190 200 210 220 230
250 260 270 280
mFLJ00 GDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
:::::::::::::::::::::::::::::::::::::::::::::
gi|527 GDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
240 250 260 270 280
>>gi|81883364|sp|Q5RK00.1|RM46_RAT RecName: Full=39S rib (277 aa)
initn: 1762 init1: 1762 opt: 1762 Z-score: 2106.2 bits: 397.6 E(): 1.3e-108
Smith-Waterman score: 1762; 94.203% identity (98.551% similar) in 276 aa overlap (3-278:1-276)
10 20 30 40 50 60
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGSSRGLSLEAASSSSRSPWRLSGALCLQRPPLIT
::::.::::::.:.:::::::.::::::::::::: ::::::::::::::::::::::
gi|818 MAAPIGRTLLGVAKGWRQLDRLWAGSSRGLSLEAAPSSSRSPWRLSGALCLQRPPLIT
10 20 30 40 50
70 80 90 100 110 120
mFLJ00 KALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQDL
: ::::::::::::::.:::::::::::::::::::::::::::::::::.: .::::::
gi|818 KPLTPLQEEMAGLLQQVEVERSLYSDHELRALDEAQRLAKKKADLYDEEQDQDVTLAQDL
60 70 80 90 100 110
130 140 150 160 170 180
mFLJ00 EDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEWQP
:::::: ::::::::::::::::::::::::::::::.:::::::::::.::::::::::
gi|818 EDMWEQEFLQFRPGARETEADKKNDRTSLHRKLDRNLILLVREKLGDQDLWMLPQVEWQP
120 130 140 150 160 170
190 200 210 220 230 240
mFLJ00 GETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLT
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
gi|818 GETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIRTESDLGVKVFFFKALLLT
180 190 200 210 220 230
250 260 270 280
mFLJ00 GDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
:::::.:::.::::::::::::::::::::::::::::
gi|818 GDFVQTGKKGRHVWASKEELGDYLQPKYLAQVRRFLLDL
240 250 260 270
>>gi|114658725|ref|XP_510572.2| PREDICTED: mitochondrial (279 aa)
initn: 1535 init1: 1401 opt: 1519 Z-score: 1816.3 bits: 343.9 E(): 1.8e-92
Smith-Waterman score: 1519; 81.295% identity (93.165% similar) in 278 aa overlap (3-278:1-278)
10 20 30 40 50
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGS--SRGLSLEAASSSSRSPWRLSGALCLQRPPL
::::: :::::.: :::...:.:::: ::.:.: :: ::. ::::: :::::::::.
gi|114 MAAPVRRTLLGVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPV
10 20 30 40 50
60 70 80 90 100 110
mFLJ00 ITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQ
..: :::::::::.::::::.::::::::::::::: ::::::::::::::.:: : :::
gi|114 VSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLYDEEDEQDILLAQ
60 70 80 90 100 110
120 130 140 150 160 170
mFLJ00 DLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEW
:::::::: ::::. ::: ::::.:::::::.::::::::::::::.::::::.:::.::
gi|114 DLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEW
120 130 140 150 160 170
180 190 200 210 220 230
mFLJ00 QPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALL
:::::::::::: :::::::.:::::::::::::: ::::.:..:::.::.:::::::::
gi|114 QPGETLRGTAERTLATLSENSMEAKFLGNAPCGHYTFKFPQAVRTESNLGAKVFFFKALL
180 190 200 210 220 230
240 250 260 270 280
mFLJ00 LTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
::::: :::.:..:::..:.::::::.::::::::::: :
gi|114 LTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFLSDL
240 250 260 270
>>gi|52783325|sp|Q9H2W6.1|RM46_HUMAN RecName: Full=39S r (279 aa)
initn: 1529 init1: 1395 opt: 1513 Z-score: 1809.1 bits: 342.6 E(): 4.6e-92
Smith-Waterman score: 1513; 80.935% identity (93.165% similar) in 278 aa overlap (3-278:1-278)
10 20 30 40 50
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGS--SRGLSLEAASSSSRSPWRLSGALCLQRPPL
::::: :::::.: :::...:.:::: ::.:.: :: ::. ::::: :::::::::.
gi|527 MAAPVRRTLLGVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPV
10 20 30 40 50
60 70 80 90 100 110
mFLJ00 ITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQ
..: :::::::::.::::::.::::::::::::::: ::::::::::.:::.:: : :::
gi|527 VSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQ
60 70 80 90 100 110
120 130 140 150 160 170
mFLJ00 DLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEW
:::::::: ::::. ::: ::::.:::::::.::::::::::::::.::::::.:::.::
gi|527 DLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEW
120 130 140 150 160 170
180 190 200 210 220 230
mFLJ00 QPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALL
:::::::::::: :::::::::::::::::::::: ::::.:..:::.::.:::::::::
gi|527 QPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALL
180 190 200 210 220 230
240 250 260 270 280
mFLJ00 LTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
::::: :::.:..:::..:.::::::.::::::::::. :
gi|527 LTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL
240 250 260 270
>>gi|194206313|ref|XP_001916683.1| PREDICTED: similar to (280 aa)
initn: 1106 init1: 985 opt: 1510 Z-score: 1805.5 bits: 341.9 E(): 7.4e-92
Smith-Waterman score: 1510; 81.362% identity (92.832% similar) in 279 aa overlap (3-278:1-279)
10 20 30 40 50
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGS--SRGLSLEAASSSSRSPWRLSGALCLQRPPL
::::: :.::: :: ::..: .:::: ::.:.: :: ::: ::::: ::.:::::::
gi|194 MAAPVRRALLGAARDWRRFDGLWAGSLGSRNLALAAAPSSSGSPWRLLGAMCLQRPPL
10 20 30 40 50
60 70 80 90 100 110
mFLJ00 ITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQ-EQGITLA
..: :::::::::.::::::.:::::::::::::.:::.:::.::::::::. :..: :.
gi|194 VSKPLTPLQEEMAALLQQIEIERSLYSDHELRALSEAQQLAKRKADLYDEEDGERNILLV
60 70 80 90 100 110
120 130 140 150 160 170
mFLJ00 QDLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVE
:::::.::: ::::.:::: :::::::::::: :::::::::::.:::::::::.:::.:
gi|194 QDLEDVWEQKFLQFKPGARITEADKKNDRTSLLRKLDRNLVLLVKEKLGDQDVWLLPQAE
120 130 140 150 160 170
180 190 200 210 220 230
mFLJ00 WQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKAL
:::::.::::::: :: ::::::::::::::::::::::::.:..::: ::.::::::::
gi|194 WQPGESLRGTAERTLAMLSENNMEAKFLGNAPCGHYKFKFPQAMRTESILGAKVFFFKAL
180 190 200 210 220 230
240 250 260 270 280
mFLJ00 LLTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
:::::: .::::.::::.:::::::::.:::::::::::::
gi|194 LLTGDFSEAGKKDRHVWVSKEELGDYLKPKYLAQVRRFLLDL
240 250 260 270 280
>>gi|109082282|ref|XP_001088970.1| PREDICTED: similar to (279 aa)
initn: 1506 init1: 1372 opt: 1505 Z-score: 1799.6 bits: 340.8 E(): 1.6e-91
Smith-Waterman score: 1505; 80.935% identity (92.806% similar) in 278 aa overlap (3-278:1-278)
10 20 30 40 50
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGSS--RGLSLEAASSSSRSPWRLSGALCLQRPPL
::::: :::::.: .::.:.:.:::: :.:.: :: : . ::::: :::::::: :
gi|109 MAAPVRRTLLGVAGSWRRLERLWAGSLSFRSLALAAAPSRNGSPWRLLGALCLQRPAL
10 20 30 40 50
60 70 80 90 100 110
mFLJ00 ITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQ
..: :::::::::.::::::.:::.::::::::::: :::::::::::::..:: : :.:
gi|109 VSKPLTPLQEEMASLLQQIEIERSVYSDHELRALDENQRLAKKKADLYDEQDEQDILLVQ
60 70 80 90 100 110
120 130 140 150 160 170
mFLJ00 DLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEW
::::::::.::::. ::: ::::.:::::::.:::::::::::::::::::::.:::.::
gi|109 DLEDMWEQTFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKLGDQDVWILPQAEW
120 130 140 150 160 170
180 190 200 210 220 230
mFLJ00 QPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALL
:::::::::::: :::::::::::::::::::::::::::.:.::::.::.:::::::::
gi|109 QPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYKFKFPQAVQTESNLGAKVFFFKALL
180 190 200 210 220 230
240 250 260 270 280
mFLJ00 LTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
::::: :::.:..:::..:.::::::.::::::::::: :
gi|109 LTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFLSDL
240 250 260 270
>>gi|73951430|ref|XP_536185.2| PREDICTED: similar to mit (280 aa)
initn: 1090 init1: 978 opt: 1499 Z-score: 1792.4 bits: 339.5 E(): 4e-91
Smith-Waterman score: 1499; 81.004% identity (93.907% similar) in 279 aa overlap (3-278:1-279)
10 20 30 40 50
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGS--SRGLSLEAASSSSRSPWRLSGALCLQRPPL
::::::::.::.:.:::.:. . ..: ::.::: :: ::: ::::: ::::::::::
gi|739 MAAPVGRTVLGVAKGWRRLEGLRTASLGSRSLSLAAAPSSSGSPWRLLGALCLQRPPL
10 20 30 40 50
60 70 80 90 100 110
mFLJ00 ITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQ-EQGITLA
..: :::::::::.:.::::::::.::::::::::::.:::::::::::::. :: : :.
gi|739 VSKPLTPLQEEMAALFQQIEVERSMYSDHELRALDEARRLAKKKADLYDEEDDEQDILLV
60 70 80 90 100 110
120 130 140 150 160 170
mFLJ00 QDLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVE
::::..::: ::::.:::: ::::::::::::.:::::::::::.:::::::::::::.:
gi|739 QDLEEVWEQKFLQFKPGARITEADKKNDRTSLQRKLDRNLVLLVKEKLGDQDVWMLPQAE
120 130 140 150 160 170
180 190 200 210 220 230
mFLJ00 WQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKAL
::::::::::::: ::::::::.::::::::::::::::::.:..:::.::.::::::::
gi|739 WQPGETLRGTAERTLATLSENNLEAKFLGNAPCGHYKFKFPQALRTESSLGAKVFFFKAL
180 190 200 210 220 230
240 250 260 270 280
mFLJ00 LLTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
:::::: :..::..:::. ::::::::.::::.::::::::
gi|739 LLTGDFSQTSKKDHHVWVCKEELGDYLKPKYLTQVRRFLLDL
240 250 260 270 280
>>gi|75042083|sp|Q5RBU2.1|RM46_PONAB RecName: Full=39S r (279 aa)
initn: 1502 init1: 1386 opt: 1486 Z-score: 1776.9 bits: 336.6 E(): 2.9e-90
Smith-Waterman score: 1486; 80.216% identity (92.446% similar) in 278 aa overlap (3-278:1-278)
10 20 30 40 50
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGS--SRGLSLEAASSSSRSPWRLSGALCLQRPPL
::::: :::::.: :::...:. ::: ::.:.: :: ::. ::::: :::::::::
gi|750 MAAPVRRTLLGVAGGWRRFERLRAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPA
10 20 30 40 50
60 70 80 90 100 110
mFLJ00 ITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQ
..: :::.:::::.::::::.::::::::::::::: :::: :::::::::.:. : :::
gi|750 VSKPLTPFQEEMASLLQQIEIERSLYSDHELRALDENQRLAGKKADLYDEEDEEDILLAQ
60 70 80 90 100 110
120 130 140 150 160 170
mFLJ00 DLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEW
::::::::.::::. ::: ::::.:::::::.::::::::::::::.::::::.:::.::
gi|750 DLEDMWEQTFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQTEW
120 130 140 150 160 170
180 190 200 210 220 230
mFLJ00 QPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALL
:::::::::::: :::::::::::::::::::::: ::::.:..:::.::.:::::::::
gi|750 QPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALL
180 190 200 210 220 230
240 250 260 270 280
mFLJ00 LTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
::::: :::.:..:::..:.::::::.::::::::::: :
gi|750 LTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFLSDL
240 250 260 270
>>gi|122146150|sp|Q3SZ22.1|RM46_BOVIN RecName: Full=39S (277 aa)
initn: 1465 init1: 1465 opt: 1465 Z-score: 1751.9 bits: 332.0 E(): 7.1e-89
Smith-Waterman score: 1465; 76.812% identity (92.754% similar) in 276 aa overlap (3-278:1-276)
10 20 30 40 50 60
mFLJ00 RKMAAPVGRTLLGLARGWRQLDRFWAGSSRGLSLEAASSSSRSPWRLSGALCLQRPPLIT
::::. ::.::::: ::... :. .::.:.: :: :.: ::::: ::::::::::..
gi|122 MAAPTRRTVLGLARCWRRFESPWSLGSRSLTLAAAPSNSASPWRLLGALCLQRPPLVS
10 20 30 40 50
70 80 90 100 110 120
mFLJ00 KALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQDL
: :::.:::::.::::.:.::::::::::::::::..: :::.:::.:..:..: :.:::
gi|122 KQLTPMQEEMAALLQQMEIERSLYSDHELRALDEAEQLEKKKSDLYEEKDEKNILLVQDL
60 70 80 90 100 110
130 140 150 160 170 180
mFLJ00 EDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEWQP
:::::: ::::.:::: :.:: ::::.::::::::::.:::..::::::::::::.::::
gi|122 EDMWEQKFLQFKPGARITDADVKNDRSSLHRKLDRNLILLVKDKLGDQDVWMLPQAEWQP
120 130 140 150 160 170
190 200 210 220 230 240
mFLJ00 GETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLT
::::: :::: ::::::::.::::::::::::::::::.:...:..::.:.:::::::::
gi|122 GETLRQTAERTLATLSENNLEAKFLGNAPCGHYKFKFPQAVRAEGSLGAKIFFFKALLLT
180 190 200 210 220 230
250 260 270 280
mFLJ00 GDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL
::: : .:.::::::::::::::.:::::::::::::
gi|122 GDFSPAVEKGRHVWASKEELGDYLKPKYLAQVRRFLLDL
240 250 260 270
>>gi|11275665|gb|AAG33698.1| P2ECSL [Homo sapiens] (210 aa)
initn: 1181 init1: 1181 opt: 1181 Z-score: 1414.7 bits: 269.2 E(): 4.3e-70
Smith-Waterman score: 1181; 83.732% identity (95.215% similar) in 209 aa overlap (70-278:1-209)
40 50 60 70 80 90
mFLJ00 SSRSPWRLSGALCLQRPPLITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLA
::.::::::.::::::::::::::: ::::
gi|112 MASLLQQIEIERSLYSDHELRALDENQRLA
10 20 30
100 110 120 130 140 150
mFLJ00 KKKADLYDEEQEQGITLAQDLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVL
::::::.:::.:: : ::::::::::: ::::. ::: ::::.:::::::.:::::::::
gi|112 KKKADLHDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVL
40 50 60 70 80 90
160 170 180 190 200 210
mFLJ00 LVREKLGDQDVWMLPQVEWQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPK
:::::.::::::.:::.:::::::::::::: :::::.:::::::::::::::: ::::.
gi|112 LVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSKNNMEAKFLGNAPCGHYTFKFPQ
100 110 120 130 140 150
220 230 240 250 260 270
mFLJ00 AIQTESDLGVKVFFFKALLLTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDS
:..:::.::.:::::::::::::: :::.:..:::..:.::::::.::::::::::. :
gi|112 AMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL
160 170 180 190 200 210
280
mFLJ00 DGLSCL
285 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Thu Mar 12 18:09:02 2009 done: Thu Mar 12 18:14:40 2009
Total Scan time: 784.640 Total Display time: 0.050
Function used was FASTA [version 34.26.5 April 26, 2007]