# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpk02476.fasta.nr -Q ../query/mKIAA0016.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0016, 162 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921233 sequences Expectation_n fit: rho(ln(x))= 4.9698+/-0.000184; mu= 9.2473+/- 0.010 mean_var=68.5308+/-13.034, 0's: 43 Z-trim: 44 B-trim: 259 in 1/67 Lambda= 0.154929 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|52783214|sp|Q9DCC8.1|TOM20_MOUSE RecName: Full= ( 145) 946 219.2 1.9e-55 gi|2498697|sp|Q15388.1|TOM20_HUMAN RecName: Full=M ( 145) 940 217.9 4.9e-55 gi|717146|gb|AAB01506.1| rTOM20 [Rattus norvegicus ( 145) 937 217.2 7.7e-55 gi|1838935|dbj|BAA09714.1| mitochondrial precursor ( 145) 936 217.0 9e-55 gi|48145553|emb|CAG32999.1| TOMM20 [Homo sapiens] ( 145) 936 217.0 9e-55 gi|157928124|gb|ABW03358.1| translocase of outer m ( 145) 932 216.1 1.7e-54 gi|194206111|ref|XP_001491687.2| PREDICTED: simila ( 145) 932 216.1 1.7e-54 gi|126306992|ref|XP_001368924.1| PREDICTED: simila ( 145) 924 214.3 5.8e-54 gi|76676674|ref|XP_870365.1| PREDICTED: similar to ( 145) 922 213.8 7.9e-54 gi|118088188|ref|XP_423972.2| PREDICTED: similar t ( 145) 919 213.2 1.3e-53 gi|224047846|ref|XP_002194509.1| PREDICTED: putati ( 146) 919 213.2 1.3e-53 gi|109085461|ref|XP_001094304.1| PREDICTED: transl ( 145) 915 212.3 2.3e-53 gi|82235869|sp|Q6DFM9.1|TOM20_XENTR RecName: Full= ( 147) 880 204.5 5.4e-51 gi|82177282|sp|Q8AVY0.1|TOM20_XENLA RecName: Full= ( 147) 872 202.7 1.8e-50 gi|109019952|ref|XP_001102287.1| PREDICTED: transl ( 139) 858 199.5 1.5e-49 gi|82183200|sp|Q6DH66.1|TOM20_DANRE RecName: Full= ( 146) 849 197.5 6.5e-49 gi|209733208|gb|ACI67473.1| Mitochondrial import r ( 147) 845 196.6 1.2e-48 gi|37589685|gb|AAH59518.1| Translocase of outer mi ( 145) 844 196.4 1.4e-48 gi|221220972|gb|ACM09147.1| Mitochondrial import r ( 147) 836 194.6 4.9e-48 gi|221222082|gb|ACM09702.1| Mitochondrial import r ( 146) 825 192.2 2.7e-47 gi|109472052|ref|XP_578267.2| PREDICTED: similar t ( 164) 816 190.2 1.2e-46 gi|109473513|ref|XP_001058390.1| PREDICTED: simila ( 196) 816 190.2 1.4e-46 gi|47229028|emb|CAG09543.1| unnamed protein produc ( 145) 773 180.5 8.4e-44 gi|189539544|ref|XP_001923336.1| PREDICTED: simila ( 140) 771 180.1 1.1e-43 gi|47209106|emb|CAF90064.1| unnamed protein produc ( 135) 682 160.2 1.1e-37 gi|149638229|ref|XP_001512118.1| PREDICTED: simila ( 214) 656 154.5 8.4e-36 gi|197127493|gb|ACH43991.1| putative translocase o ( 124) 650 153.0 1.4e-35 gi|198416610|ref|XP_002128237.1| PREDICTED: simila ( 164) 636 150.0 1.5e-34 gi|159162790|pdb|1OM2|A Chain A, Solution Nmr Stru ( 95) 603 142.4 1.7e-32 gi|149271700|ref|XP_001475586.1| PREDICTED: simila ( 126) 603 142.5 2.1e-32 gi|210121487|gb|EEA69199.1| hypothetical protein B ( 140) 603 142.5 2.2e-32 gi|210095021|gb|EEA43192.1| hypothetical protein B ( 140) 602 142.3 2.6e-32 gi|91094041|ref|XP_968248.1| PREDICTED: similar to ( 151) 577 136.7 1.3e-30 gi|72006261|ref|XP_782504.1| PREDICTED: hypothetic ( 165) 577 136.8 1.4e-30 gi|48141950|ref|XP_397284.1| PREDICTED: similar to ( 145) 572 135.6 2.8e-30 gi|213972549|ref|NP_001135431.1| translocase of ou ( 143) 566 134.3 7e-30 gi|15741057|gb|AAL05599.1| outer membrane receptor ( 90) 562 133.2 9.1e-30 gi|212381672|gb|ACJ25169.1| translocase of outer m ( 146) 563 133.6 1.1e-29 gi|212512892|gb|EEB15569.1| mitochondrial import r ( 150) 547 130.0 1.4e-28 gi|108876687|gb|EAT40912.1| mitochondrial import r ( 233) 544 129.5 3.1e-28 gi|156227845|gb|EDO48647.1| predicted protein [Nem ( 138) 535 127.3 8.3e-28 gi|193648040|ref|XP_001942651.1| PREDICTED: simila ( 171) 529 126.1 2.5e-27 gi|157013062|gb|EAA00369.4| AGAP012339-PA [Anophel ( 153) 521 124.2 7.9e-27 gi|194117479|gb|EDW39522.1| GL11896 [Drosophila pe ( 166) 515 122.9 2.1e-26 gi|16769486|gb|AAL28962.1| LD34461p [Drosophila me ( 171) 515 122.9 2.2e-26 gi|194186394|gb|EDX00006.1| GE23225 [Drosophila ya ( 168) 513 122.5 2.9e-26 gi|194181630|gb|EDW95241.1| GE19643 [Drosophila ya ( 171) 513 122.5 3e-26 gi|190655204|gb|EDV52447.1| GG16077 [Drosophila er ( 171) 513 122.5 3e-26 gi|221130202|ref|XP_002154736.1| PREDICTED: simila ( 159) 507 121.1 7.1e-26 gi|194161908|gb|EDW76809.1| GK18666 [Drosophila wi ( 165) 507 121.1 7.3e-26 >>gi|52783214|sp|Q9DCC8.1|TOM20_MOUSE RecName: Full=Mito (145 aa) initn: 946 init1: 946 opt: 946 Z-score: 1151.7 bits: 219.2 E(): 1.9e-55 Smith-Waterman score: 946; 100.000% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK ::::::::::::::::::::::::::::::::::::::::::: gi|527 MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::: gi|527 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 110 120 130 140 >>gi|2498697|sp|Q15388.1|TOM20_HUMAN RecName: Full=Mitoc (145 aa) initn: 940 init1: 940 opt: 940 Z-score: 1144.4 bits: 217.9 E(): 4.9e-55 Smith-Waterman score: 940; 99.310% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK ::::::::::::::::::::::::::::::::::::::::::: gi|249 MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|249 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::: gi|249 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 110 120 130 140 >>gi|717146|gb|AAB01506.1| rTOM20 [Rattus norvegicus] (145 aa) initn: 937 init1: 937 opt: 937 Z-score: 1140.8 bits: 217.2 E(): 7.7e-55 Smith-Waterman score: 937; 98.621% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK :::::::::::.:::::::::::::::::.::::::::::::: gi|717 MVGRNSAIAAGLCGALFIGYCIYFDRKRRGDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|717 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::: gi|717 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 110 120 130 140 >>gi|1838935|dbj|BAA09714.1| mitochondrial precursor rec (145 aa) initn: 936 init1: 936 opt: 936 Z-score: 1139.6 bits: 217.0 E(): 9e-55 Smith-Waterman score: 936; 98.621% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK :::::::::::::::::::::::::::::::::::.::::::: gi|183 MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKDRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|183 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::::::.::::: gi|183 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLGEDDVE 110 120 130 140 >>gi|48145553|emb|CAG32999.1| TOMM20 [Homo sapiens] (145 aa) initn: 936 init1: 936 opt: 936 Z-score: 1139.6 bits: 217.0 E(): 9e-55 Smith-Waterman score: 936; 98.621% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK ::::::::::::::::::::::::::::::::::::::::::: gi|481 MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|481 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::. gi|481 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVD 110 120 130 140 >>gi|157928124|gb|ABW03358.1| translocase of outer mitoc (145 aa) initn: 932 init1: 932 opt: 932 Z-score: 1134.8 bits: 216.1 E(): 1.7e-54 Smith-Waterman score: 932; 98.621% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK :::::::::::::::::::::::.::::::::::::::::::: gi|157 MVGRNSAIAAGVCGALFIGYCIYIDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|157 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::: gi|157 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 110 120 130 140 >>gi|194206111|ref|XP_001491687.2| PREDICTED: similar to (145 aa) initn: 932 init1: 932 opt: 932 Z-score: 1134.8 bits: 216.1 E(): 1.7e-54 Smith-Waterman score: 932; 98.621% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK ::::::::::::::::::::::::::::::::::::::::::: gi|194 MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP ::::::::::::::::::::::::::::::::::::::::..:::::::::::::::::: gi|194 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQAEYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::: gi|194 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 110 120 130 140 >>gi|126306992|ref|XP_001368924.1| PREDICTED: similar to (145 aa) initn: 924 init1: 924 opt: 924 Z-score: 1125.1 bits: 214.3 E(): 5.8e-54 Smith-Waterman score: 924; 97.241% identity (100.000% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK ::::..::::::::::::::::::::::::::::::::::::: gi|126 MVGRSGAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|126 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ::::::::::::::::::::::::::::::::.::::::::: gi|126 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSVQSLAEDDVE 110 120 130 140 >>gi|76676674|ref|XP_870365.1| PREDICTED: similar to Mit (145 aa) initn: 922 init1: 922 opt: 922 Z-score: 1122.7 bits: 213.8 E(): 7.9e-54 Smith-Waterman score: 922; 97.241% identity (99.310% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK ::::::::::::::.:::::::::::::::::::::::::::: gi|766 MVGRNSAIAAGVCGVLFIGYCIYFDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP ::::::::::: :::::::::::::::::::::::::::::.::::::::::.::::::: gi|766 KQKLAKERAGLFKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNGIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::::::::::: gi|766 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE 110 120 130 140 >>gi|118088188|ref|XP_423972.2| PREDICTED: similar to mi (145 aa) initn: 919 init1: 919 opt: 919 Z-score: 1119.1 bits: 213.2 E(): 1.3e-53 Smith-Waterman score: 919; 96.552% identity (99.310% similar) in 145 aa overlap (18-162:1-145) 10 20 30 40 50 60 mKIAA0 PLPGGLPRPGVRPSRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRK :::..::::::.::::::::::::::::::::::::::::::: gi|118 MVGKTSAIAAGLCGALFIGYCIYFDRKRRSDPNFKNRLRERRK 10 20 30 40 70 80 90 100 110 120 mKIAA0 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|118 KQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQP 50 60 70 80 90 100 130 140 150 160 mKIAA0 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE :::::::::::::::::::::::::::::::::: ::::::: gi|118 QQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQCLAEDDVE 110 120 130 140 162 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 12:08:26 2009 done: Thu Mar 12 12:12:44 2009 Total Scan time: 621.470 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]