FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0116.ptfa, 286 aa
 vs ./tmplib.26680 library

1768731 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.5445+/-0.00375; mu= 18.5354+/- 0.252
 mean_var=65.3844+/-14.746, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1586

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4013  ( 308 res)   mnj12200                   ( 308)  393   98 4.9e-22


>>mKIAA4013  ( 308 res)   mnj12200                        (308 aa)
 initn: 333 init1: 309 opt: 393  Z-score: 488.0  bits: 98.3 E(): 4.9e-22
Smith-Waterman score: 393;  30.943% identity (32.411% ungapped) in 265 aa overlap (13-271:50-308)

                                 10        20        30        40  
mKIAA0                   LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSG
                                     ..:. : :::   ..: . :.   .:...:
mKIAA4 GAEGCAGAERAGKMAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADG
      20        30        40        50        60        70         

             50        60        70        80         90       100 
mKIAA0 SARVKLGHTDFLVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFE-GRGGDDLGTEIA
       :: ::::.:  . :::::...: .. :..::.   ::     . .:. :  :..  .  .
mKIAA4 SALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVT-S
      80        90       100       110       120       130         

             110       120       130       140       150       160 
mKIAA0 NTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP
       . .  . .:.. .  ..::::: .  :::: :.. :.  ::..:: ..:. ::: :...:
mKIAA4 QFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP
      140       150       160       170       180       190        

             170       180       190       200        210       220
mKIAA0 RVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCIVTLCKIG-CRHVVDATLQEEACSLAS
       .: . : : .  ...:.   :    :.:.. :  ...  .     .:: : .::  : ..
mKIAA4 EVTINE-ETALAEVNLKKKSY----LNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGT
      200        210           220       230       240       250   

              230       240       250           260       270      
mKIAA0 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESS----KRVGKVLHVSLQSLLHKEESLG
       : : .   : . :..: : ..:   .. . :  .    :.:.:.:   .::. ::     
mKIAA4 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVIQSMRHK     
           260       270       280       290       300             

        280      
mKIAA0 PKRPRVGFLG




286 residues in 1 query   sequences
1768731 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:12:30 2006 done: Mon Mar 27 10:12:30 2006
 Scan time:  0.510 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]