# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpk02179.fasta.nr -Q ../query/mKIAA0101.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0101, 140 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921155 sequences Expectation_n fit: rho(ln(x))= 4.7490+/-0.000185; mu= 7.9553+/- 0.010 mean_var=63.7058+/-12.354, 0's: 44 Z-trim: 44 B-trim: 1486 in 1/64 Lambda= 0.160688 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148694161|gb|EDL26108.1| mCG131663, isoform CRA ( 140) 913 219.5 1.3e-55 gi|149245224|ref|XP_001472289.1| PREDICTED: hypoth ( 160) 792 191.5 4.1e-47 gi|52783147|sp|Q9CQX4.1|PAF_MOUSE RecName: Full=PC ( 110) 739 179.0 1.5e-43 gi|12850259|dbj|BAB28650.1| unnamed protein produc ( 110) 729 176.7 7.7e-43 gi|52783100|sp|Q6RIA2.1|PAF_RAT RecName: Full=PCNA ( 110) 716 173.7 6.2e-42 gi|148707428|gb|EDL39375.1| mCG1047258 [Mus muscul ( 110) 714 173.2 8.6e-42 gi|119598089|gb|EAW77683.1| hCG2039386, isoform CR ( 107) 561 137.8 4e-31 gi|119598086|gb|EAW77680.1| hCG2039386, isoform CR ( 115) 547 134.5 4e-30 gi|74000861|ref|XP_853346.1| PREDICTED: similar to ( 100) 528 130.1 7.6e-29 gi|194035027|ref|XP_001927039.1| PREDICTED: simila ( 163) 519 128.2 4.7e-28 gi|126277352|ref|XP_001375098.1| PREDICTED: simila ( 117) 505 124.8 3.5e-27 gi|47213233|emb|CAF89754.1| unnamed protein produc ( 114) 427 106.7 9.4e-22 gi|149632219|ref|XP_001509145.1| PREDICTED: simila ( 200) 418 104.8 6.1e-21 gi|50603813|gb|AAH77667.1| MGC89765 protein [Xenop ( 125) 400 100.5 7.7e-20 gi|221220744|gb|ACM09033.1| PCNA-associated factor ( 113) 397 99.8 1.2e-19 gi|57032577|gb|AAH88968.1| LOC496365 protein [Xeno ( 123) 384 96.8 1e-18 gi|209735044|gb|ACI68391.1| PCNA-associated factor ( 113) 379 95.6 2.1e-18 gi|148703932|gb|EDL35879.1| mCG49332 [Mus musculus ( 87) 366 92.5 1.4e-17 gi|210104307|gb|EEA52332.1| hypothetical protein B ( 105) 255 66.8 8.9e-10 gi|198424847|ref|XP_002131342.1| PREDICTED: simila ( 213) 192 52.5 3.8e-05 gi|119598088|gb|EAW77682.1| hCG2039386, isoform CR ( 58) 184 50.2 5.1e-05 gi|71773819|ref|NP_001025160.1| hypothetical prote ( 65) 184 50.2 5.6e-05 gi|221130338|ref|XP_002163831.1| PREDICTED: simila ( 161) 162 45.4 0.0038 gi|156544534|ref|XP_001607698.1| PREDICTED: simila ( 140) 157 44.2 0.0077 >>gi|148694161|gb|EDL26108.1| mCG131663, isoform CRA_b [ (140 aa) initn: 913 init1: 913 opt: 913 Z-score: 1154.5 bits: 219.5 E(): 1.3e-55 Smith-Waterman score: 913; 100.000% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA0 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL 70 80 90 100 110 120 130 140 mKIAA0 GKAKRKACPLQPDHRDDENE :::::::::::::::::::: gi|148 GKAKRKACPLQPDHRDDENE 130 140 >>gi|149245224|ref|XP_001472289.1| PREDICTED: hypothetic (160 aa) initn: 712 init1: 712 opt: 792 Z-score: 1002.1 bits: 191.5 E(): 4.1e-47 Smith-Waterman score: 792; 93.182% identity (94.697% similar) in 132 aa overlap (9-140:36-160) 10 20 30 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANY ::::::::::::.::::::::: : gi|149 AHKPGHEEQCLQSDRSLRLFAQDRTKQKRRGSSLIETSAVGVSVKVVSSCVN-------Y 10 20 30 40 50 40 50 60 70 80 90 mKIAA0 VPGAYRKAVASQAPRKVLGSSTFVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFF :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|149 VPGAYRKAVASQAPRKVLGSSTFVTSSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFF 60 70 80 90 100 110 100 110 120 130 140 mKIAA0 RLSPKESKKENQAPEEAGTSGLGKAKRKACPLQPDHRDDENE :::::::::::::::::::::::::::::::::::::::::: gi|149 RLSPKESKKENQAPEEAGTSGLGKAKRKACPLQPDHRDDENE 120 130 140 150 160 >>gi|52783147|sp|Q9CQX4.1|PAF_MOUSE RecName: Full=PCNA-a (110 aa) initn: 739 init1: 739 opt: 739 Z-score: 937.9 bits: 179.0 E(): 1.5e-43 Smith-Waterman score: 739; 100.000% identity (100.000% similar) in 110 aa overlap (31-140:1-110) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST :::::::::::::::::::::::::::::: gi|527 MVRTKANYVPGAYRKAVASQAPRKVLGSST 10 20 30 70 80 90 100 110 120 mKIAA0 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL 40 50 60 70 80 90 130 140 mKIAA0 GKAKRKACPLQPDHRDDENE :::::::::::::::::::: gi|527 GKAKRKACPLQPDHRDDENE 100 110 >>gi|12850259|dbj|BAB28650.1| unnamed protein product [M (110 aa) initn: 729 init1: 729 opt: 729 Z-score: 925.4 bits: 176.7 E(): 7.7e-43 Smith-Waterman score: 729; 99.091% identity (99.091% similar) in 110 aa overlap (31-140:1-110) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST :::::::::::::::::::::::::::::: gi|128 MVRTKANYVPGAYRKAVASQAPRKVLGSST 10 20 30 70 80 90 100 110 120 mKIAA0 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 FVTNSSSSSGKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL 40 50 60 70 80 90 130 140 mKIAA0 GKAKRKACPLQPDHRDDENE :::::::::::::::::::: gi|128 GKAKRKACPLQPDHRDDENE 100 110 >>gi|52783100|sp|Q6RIA2.1|PAF_RAT RecName: Full=PCNA-ass (110 aa) initn: 716 init1: 716 opt: 716 Z-score: 909.1 bits: 173.7 E(): 6.2e-42 Smith-Waterman score: 716; 95.455% identity (99.091% similar) in 110 aa overlap (31-140:1-110) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST :::::::::::::::.:::::::::::::: gi|527 MVRTKANYVPGAYRKVVASQAPRKVLGSST 10 20 30 70 80 90 100 110 120 mKIAA0 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL ::::::.::::::::::::::::::::::::::::::::::::.:::::: :::::.::: gi|527 FVTNSSGSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKDSKKENQIPEEAGSSGL 40 50 60 70 80 90 130 140 mKIAA0 GKAKRKACPLQPDHRDDENE :::::::::::::::::::: gi|527 GKAKRKACPLQPDHRDDENE 100 110 >>gi|148707428|gb|EDL39375.1| mCG1047258 [Mus musculus] (110 aa) initn: 714 init1: 714 opt: 714 Z-score: 906.6 bits: 173.2 E(): 8.6e-42 Smith-Waterman score: 714; 96.364% identity (99.091% similar) in 110 aa overlap (31-140:1-110) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST :::::::::::::::::::::::::::::: gi|148 MVRTKANYVPGAYRKAVASQAPRKVLGSST 10 20 30 70 80 90 100 110 120 mKIAA0 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL ::::::::::::::::::::::::::::::::::::::::: ::::.:.:::::::.::: gi|148 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSAKESKEESQAPEEAGSSGL 40 50 60 70 80 90 130 140 mKIAA0 GKAKRKACPLQPDHRDDENE :::::::::::::::::::: gi|148 GKAKRKACPLQPDHRDDENE 100 110 >>gi|119598089|gb|EAW77683.1| hCG2039386, isoform CRA_d (107 aa) initn: 558 init1: 473 opt: 561 Z-score: 715.1 bits: 137.8 E(): 4e-31 Smith-Waterman score: 561; 82.353% identity (93.137% similar) in 102 aa overlap (41-140:6-107) 20 30 40 50 60 mKIAA0 SLIETSAVGVTVKVVSSCVNMVRTKANYVPGAY-RKAVASQAPRKVLGSSTFVTNSSS-S : : .. ::..:::::::::: .:::.: : gi|119 NKTARGRYCKRLVAARAPRKVLGSSTSATNSTSVS 10 20 30 70 80 90 100 110 120 mKIAA0 SRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGLGKAKRKAC :::::::::::::::::::::::::::::::::::.:.:::: :::::.::::::::::: gi|119 SRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKAC 40 50 60 70 80 90 130 140 mKIAA0 PLQPDHRDDENE :::::: .::.: gi|119 PLQPDHTNDEKE 100 >>gi|119598086|gb|EAW77680.1| hCG2039386, isoform CRA_b (115 aa) initn: 548 init1: 384 opt: 547 Z-score: 697.1 bits: 134.5 E(): 4e-30 Smith-Waterman score: 547; 77.064% identity (90.826% similar) in 109 aa overlap (31-138:1-109) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST ::::::. :::.:::.::..:::::::::: gi|119 MVRTKADSVPGTYRKVVAARAPRKVLGSST 10 20 30 70 80 90 100 110 mKIAA0 FVTNSSS-SSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSG .:::.: ::::::::::::::::::::::::::::::::::::.:.:::: :::::.:: gi|119 SATNSTSVSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKDSEKENQIPEEAGSSG 40 50 60 70 80 90 120 130 140 mKIAA0 LGKAKRKACPLQPDHRDDENE ::::::. : .: ... gi|119 LGKAKRNQEPPILQHTEQQAGHTAH 100 110 >>gi|74000861|ref|XP_853346.1| PREDICTED: similar to HCV (100 aa) initn: 530 init1: 369 opt: 528 Z-score: 674.2 bits: 130.1 E(): 7.6e-29 Smith-Waterman score: 528; 82.474% identity (94.845% similar) in 97 aa overlap (31-126:1-97) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST ::::::. :::.:::.:::.:::::::::: gi|740 MVRTKADSVPGTYRKVVASRAPRKVLGSST 10 20 30 70 80 90 100 110 mKIAA0 FVTNSSS-SSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSG .:::. ::::.:::::::::::::::::::::::::::::::.:.:::. :::::.:: gi|740 SATNSTPLSSRKVENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKDSEKENRIPEEAGSSG 40 50 60 70 80 90 120 130 140 mKIAA0 LGKAKRKACPLQPDHRDDENE :::::.: gi|740 LGKAKKKKIQ 100 >>gi|194035027|ref|XP_001927039.1| PREDICTED: similar to (163 aa) initn: 519 init1: 519 opt: 519 Z-score: 660.0 bits: 128.2 E(): 4.7e-28 Smith-Waterman score: 519; 82.105% identity (94.737% similar) in 95 aa overlap (31-125:1-95) 10 20 30 40 50 60 mKIAA0 TVAGTSFSGSSLIETSAVGVTVKVVSSCVNMVRTKANYVPGAYRKAVASQAPRKVLGSST ::::::. :::.:::.:::.:::::::::: gi|194 MVRTKADSVPGTYRKVVASRAPRKVLGSST 10 20 30 70 80 90 100 110 120 mKIAA0 FVTNSSSSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSPKESKKENQAPEEAGTSGL ....: :::::::::::::::::::::::::::::::::: :.:.:::. :::::.::: gi|194 SANSTSLSSRKAENKYAGGNPVCVRPTPKWQKGIGEFFRLSAKDSEKENRIPEEAGSSGL 40 50 60 70 80 90 130 140 mKIAA0 GKAKRKACPLQPDHRDDENE ::::: gi|194 GKAKRNQSHGLSFTPSTQPTQGAVISMDKEMVARLSLGLLLLVLLLPGQIYSSIPLTSTE 100 110 120 130 140 150 140 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 21:31:24 2009 done: Thu Mar 12 21:35:25 2009 Total Scan time: 578.660 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]