# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpk02075.fasta.nr -Q ../query/mKIAA1235.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1235, 426 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921133 sequences Expectation_n fit: rho(ln(x))= 5.2272+/-0.000182; mu= 10.6537+/- 0.010 mean_var=68.7843+/-13.383, 0's: 32 Z-trim: 33 B-trim: 189 in 1/64 Lambda= 0.154643 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|74143215|dbj|BAE24141.1| unnamed protein produc ( 499) 2809 635.6 7.8e-180 gi|148669707|gb|EDL01654.1| mCG5693 [Mus musculus] (1623) 2809 635.9 2e-179 gi|145553997|ref|NP_001078824.1| AT rich interacti (2244) 2809 636.0 2.6e-179 gi|109460737|ref|XP_001066861.1| PREDICTED: simila (1904) 2772 627.7 7e-177 gi|48427622|emb|CAC43233.2| 6A3-5 protein [Rattus (1569) 2765 626.1 1.8e-176 gi|57208442|emb|CAI42305.1| novel protein [Homo sa (1485) 2755 623.9 7.9e-176 gi|169169253|ref|XP_001133842.2| PREDICTED: hypoth (1563) 2755 623.9 8.3e-176 gi|55667869|emb|CAH71534.1| novel protein [Homo sa (1736) 2755 623.9 9e-176 gi|18568414|gb|AAL76077.1|AF468300_1 BRG1-binding (1740) 2755 623.9 9e-176 gi|114609921|ref|XP_518822.2| PREDICTED: AT rich i (1801) 2755 623.9 9.3e-176 gi|25005043|gb|AAN70985.1| BAF250b subunit [Homo s (1957) 2755 623.9 9.9e-176 gi|22597106|gb|AAN03447.1|AF521671_1 SWI/SNF chrom (2165) 2755 624.0 1.1e-175 gi|119568067|gb|EAW47682.1| AT rich interactive do (2178) 2755 624.0 1.1e-175 gi|119568068|gb|EAW47683.1| AT rich interactive do (2191) 2755 624.0 1.1e-175 gi|119568063|gb|EAW47678.1| AT rich interactive do (2231) 2755 624.0 1.1e-175 gi|119568066|gb|EAW47681.1| AT rich interactive do (2234) 2755 624.0 1.1e-175 gi|73921720|sp|Q8NFD5.2|ARI1B_HUMAN RecName: Full= (2236) 2755 624.0 1.1e-175 gi|24459904|emb|CAD29425.1| transcription factor 1 (1758) 2751 623.0 1.7e-175 gi|194379432|dbj|BAG63682.1| unnamed protein produ ( 757) 2746 621.7 1.9e-175 gi|11527189|gb|AAG36928.1|AF259792_1 p250R [Homo s (1486) 2739 620.3 9.4e-175 gi|73946168|ref|XP_541164.2| PREDICTED: similar to (1918) 2726 617.5 8.7e-174 gi|194227545|ref|XP_001493135.2| PREDICTED: AT ric (1724) 2723 616.8 1.3e-173 gi|118088409|ref|XP_001232096.1| PREDICTED: simila (1754) 2684 608.1 5.3e-171 gi|50347101|gb|AAT75226.1| 6A3-5 protein [Sus scro (1740) 2677 606.5 1.6e-170 gi|7021889|dbj|BAA91426.1| unnamed protein product ( 412) 2638 597.4 2e-168 gi|149409350|ref|XP_001505584.1| PREDICTED: simila (1638) 2569 582.4 2.7e-163 gi|26326685|dbj|BAC27086.1| unnamed protein produc ( 316) 2119 481.5 1.2e-133 gi|118117078|ref|XP_417693.2| PREDICTED: similar t (1361) 1986 452.3 3.3e-124 gi|14042120|dbj|BAB55114.1| unnamed protein produc ( 527) 1979 450.4 4.5e-124 gi|14042494|dbj|BAB55270.1| unnamed protein produc ( 613) 1979 450.5 5.1e-124 gi|22760714|dbj|BAC11306.1| unnamed protein produc ( 754) 1979 450.5 6e-124 gi|56203231|emb|CAI21621.1| AT rich interactive do (1685) 1979 450.8 1.2e-123 gi|114554934|ref|XP_001144899.1| PREDICTED: AT ric (1839) 1979 450.8 1.2e-123 gi|114554936|ref|XP_001145054.1| PREDICTED: AT ric (1903) 1979 450.8 1.3e-123 gi|8489817|gb|AAF75765.1|AF265208_1 SWI-SNF comple (1927) 1979 450.8 1.3e-123 gi|13195757|gb|AAG17549.2|AF219114_1 chromatin rem (1939) 1979 450.8 1.3e-123 gi|114554932|ref|XP_001144973.1| PREDICTED: AT ric (1941) 1979 450.8 1.3e-123 gi|22597104|gb|AAN03446.1|AF521670_1 SWI/SNF chrom (1999) 1979 450.8 1.3e-123 gi|119628198|gb|EAX07793.1| AT rich interactive do (2068) 1979 450.8 1.4e-123 gi|114554930|ref|XP_001144752.1| PREDICTED: AT ric (2068) 1979 450.8 1.4e-123 gi|11320942|gb|AAG33967.1|AF231056_1 BRG1-Associat (2285) 1979 450.8 1.5e-123 gi|114554928|ref|XP_513235.2| PREDICTED: AT rich i (2285) 1979 450.8 1.5e-123 gi|73920185|sp|O14497.3|ARI1A_HUMAN RecName: Full= (2285) 1979 450.8 1.5e-123 gi|62898111|dbj|BAD96995.1| AT rich interactive do (1181) 1974 449.6 1.9e-123 gi|119888752|ref|XP_592084.3| PREDICTED: similar t (2286) 1975 450.0 2.7e-123 gi|149024190|gb|EDL80687.1| AT rich interactive do (1911) 1974 449.7 2.8e-123 gi|123229219|emb|CAM25147.1| AT rich interactive d (1681) 1969 448.5 5.4e-123 gi|52139164|gb|AAH82554.1| AT rich interactive dom (1902) 1969 448.6 6e-123 gi|148698102|gb|EDL30049.1| mCG20806 [Mus musculus (1955) 1969 448.6 6.1e-123 gi|123229223|emb|CAM25152.1| AT rich interactive d (2042) 1969 448.6 6.3e-123 >>gi|74143215|dbj|BAE24141.1| unnamed protein product [M (499 aa) initn: 2698 init1: 2698 opt: 2809 Z-score: 3384.9 bits: 635.6 E(): 7.8e-180 Smith-Waterman score: 2809; 98.140% identity (98.372% similar) in 430 aa overlap (4-426:70-499) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|741 KIVKKNKLFVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 40 50 60 70 80 90 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ 100 110 120 130 140 150 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 160 170 180 190 200 210 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 220 230 240 250 260 270 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 280 290 300 310 320 330 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI 340 350 360 370 380 390 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 400 410 420 430 440 450 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|741 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 460 470 480 490 >>gi|148669707|gb|EDL01654.1| mCG5693 [Mus musculus] (1623 aa) initn: 2698 init1: 2698 opt: 2809 Z-score: 3377.5 bits: 635.9 E(): 2e-179 Smith-Waterman score: 2809; 98.140% identity (98.372% similar) in 430 aa overlap (4-426:1194-1623) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|148 KIVKKNKLFVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 1170 1180 1190 1200 1210 1220 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ 1230 1240 1250 1260 1270 1280 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1290 1300 1310 1320 1330 1340 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1350 1360 1370 1380 1390 1400 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1410 1420 1430 1440 1450 1460 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI 1470 1480 1490 1500 1510 1520 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1530 1540 1550 1560 1570 1580 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|148 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 1590 1600 1610 1620 >>gi|145553997|ref|NP_001078824.1| AT rich interactive d (2244 aa) initn: 2698 init1: 2698 opt: 2809 Z-score: 3375.5 bits: 636.0 E(): 2.6e-179 Smith-Waterman score: 2809; 98.140% identity (98.372% similar) in 430 aa overlap (4-426:1815-2244) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|145 KIVKKNKLFVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 1790 1800 1810 1820 1830 1840 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ 1850 1860 1870 1880 1890 1900 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1910 1920 1930 1940 1950 1960 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1970 1980 1990 2000 2010 2020 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 2030 2040 2050 2060 2070 2080 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI 2090 2100 2110 2120 2130 2140 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 2150 2160 2170 2180 2190 2200 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|145 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 2210 2220 2230 2240 >>gi|109460737|ref|XP_001066861.1| PREDICTED: similar to (1904 aa) initn: 2660 init1: 2660 opt: 2772 Z-score: 3331.9 bits: 627.7 E(): 7e-177 Smith-Waterman score: 2772; 96.744% identity (97.907% similar) in 430 aa overlap (4-426:1475-1904) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::: ::::::::::: gi|109 KIVKKNNLFVVDRSDRLGRVQEFNSGLLHWQLGGGDTTEHILTHFESKMEIPPRRRPPAP 1450 1460 1470 1480 1490 1500 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::::::::: :::::::::::::::::::::::::::::::.::::::.:::::::::: gi|109 LSSTGKKKELAGKGDSEEQPEKSIIATIDDVLSARPGALPEDSNPGPQTESGKFPFGIQQ 1510 1520 1530 1540 1550 1560 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1570 1580 1590 1600 1610 1620 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1630 1640 1650 1660 1670 1680 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1690 1700 1710 1720 1730 1740 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI 1750 1760 1770 1780 1790 1800 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::.::::::::::::::::.::::::::::::::::::::::::::::::: gi|109 AVQKGSIGNLIGFLEDGVTMAQYQQSQHTLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1810 1820 1830 1840 1850 1860 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|109 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 1870 1880 1890 1900 >>gi|48427622|emb|CAC43233.2| 6A3-5 protein [Rattus ratt (1569 aa) initn: 2653 init1: 2653 opt: 2765 Z-score: 3324.7 bits: 626.1 E(): 1.8e-176 Smith-Waterman score: 2765; 96.512% identity (97.674% similar) in 430 aa overlap (4-426:948-1377) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::: ::::::::::: gi|484 KIVKKNNLFVVDRSDRLGRVQEFNSGLLHWQLGGGDTTEHILTHFESKMEIPPRRRPPAP 920 930 940 950 960 970 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ ::: :::::: :::::::::::::::::::::::::::::::.::::::.:::::::::: gi|484 LSSHGKKKELAGKGDSEEQPEKSIIATIDDVLSARPGALPEDSNPGPQTESGKFPFGIQQ 980 990 1000 1010 1020 1030 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1040 1050 1060 1070 1080 1090 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1100 1110 1120 1130 1140 1150 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1160 1170 1180 1190 1200 1210 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI 1220 1230 1240 1250 1260 1270 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::.::::::::::::::::.::::::::::::::::::::::::::::::: gi|484 AVQKGSIGNLIGFLEDGVTMAQYQQSQHTLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1280 1290 1300 1310 1320 1330 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|484 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQLMTPVRAHMCEGTLEGHILTG 1340 1350 1360 1370 1380 1390 gi|484 CFLFSFIQCRKKEKKNLCFSAPFTIYQLGIKEIINLNSYKLIFAVCVYKYIRWGISVSFS 1400 1410 1420 1430 1440 1450 >>gi|57208442|emb|CAI42305.1| novel protein [Homo sapien (1485 aa) initn: 2644 init1: 2644 opt: 2755 Z-score: 3313.0 bits: 623.9 E(): 7.9e-176 Smith-Waterman score: 2755; 96.047% identity (97.907% similar) in 430 aa overlap (4-426:1056-1485) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|572 KIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 1030 1040 1050 1060 1070 1080 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::.:.::: ::::::::: ::::::::::::::::::::::.::::::.:.:::::::: gi|572 LSSAGRKKEQEGKGDSEEQQEKSIIATIDDVLSARPGALPEDANPGPQTESSKFPFGIQQ 1090 1100 1110 1120 1130 1140 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 AKSHRNIKLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1150 1160 1170 1180 1190 1200 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1210 1220 1230 1240 1250 1260 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1270 1280 1290 1300 1310 1320 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|572 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAI 1330 1340 1350 1360 1370 1380 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1390 1400 1410 1420 1430 1440 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|572 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 1450 1460 1470 1480 >>gi|169169253|ref|XP_001133842.2| PREDICTED: hypothetic (1563 aa) initn: 2644 init1: 2644 opt: 2755 Z-score: 3312.6 bits: 623.9 E(): 8.3e-176 Smith-Waterman score: 2755; 96.047% identity (97.907% similar) in 430 aa overlap (4-426:1134-1563) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|169 KIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 1110 1120 1130 1140 1150 1160 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::.:.::: ::::::::: ::::::::::::::::::::::.::::::.:.:::::::: gi|169 LSSAGRKKEQEGKGDSEEQQEKSIIATIDDVLSARPGALPEDANPGPQTESSKFPFGIQQ 1170 1180 1190 1200 1210 1220 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 AKSHRNIKLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1230 1240 1250 1260 1270 1280 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1290 1300 1310 1320 1330 1340 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1350 1360 1370 1380 1390 1400 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|169 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAI 1410 1420 1430 1440 1450 1460 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1470 1480 1490 1500 1510 1520 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|169 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 1530 1540 1550 1560 >>gi|55667869|emb|CAH71534.1| novel protein [Homo sapien (1736 aa) initn: 2644 init1: 2644 opt: 2755 Z-score: 3312.0 bits: 623.9 E(): 9e-176 Smith-Waterman score: 2755; 96.047% identity (97.907% similar) in 430 aa overlap (4-426:1307-1736) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|556 KIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 1280 1290 1300 1310 1320 1330 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::.:.::: ::::::::: ::::::::::::::::::::::.::::::.:.:::::::: gi|556 LSSAGRKKEQEGKGDSEEQQEKSIIATIDDVLSARPGALPEDANPGPQTESSKFPFGIQQ 1340 1350 1360 1370 1380 1390 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 AKSHRNIKLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1400 1410 1420 1430 1440 1450 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1460 1470 1480 1490 1500 1510 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1520 1530 1540 1550 1560 1570 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|556 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAI 1580 1590 1600 1610 1620 1630 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1640 1650 1660 1670 1680 1690 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|556 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 1700 1710 1720 1730 >>gi|18568414|gb|AAL76077.1|AF468300_1 BRG1-binding prot (1740 aa) initn: 2644 init1: 2644 opt: 2755 Z-score: 3312.0 bits: 623.9 E(): 9e-176 Smith-Waterman score: 2755; 96.047% identity (97.907% similar) in 430 aa overlap (4-426:1311-1740) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|185 KIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 1290 1300 1310 1320 1330 1340 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::.:.::: ::::::::: ::::::::::::::::::::::.::::::.:.:::::::: gi|185 LSSAGRKKEQEGKGDSEEQQEKSIIATIDDVLSARPGALPEDANPGPQTESSKFPFGIQQ 1350 1360 1370 1380 1390 1400 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|185 AKSHRNIKLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1410 1420 1430 1440 1450 1460 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|185 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1470 1480 1490 1500 1510 1520 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|185 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1530 1540 1550 1560 1570 1580 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|185 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAI 1590 1600 1610 1620 1630 1640 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|185 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1650 1660 1670 1680 1690 1700 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|185 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 1710 1720 1730 1740 >>gi|114609921|ref|XP_518822.2| PREDICTED: AT rich inter (1801 aa) initn: 2644 init1: 2644 opt: 2755 Z-score: 3311.7 bits: 623.9 E(): 9.3e-176 Smith-Waterman score: 2755; 96.047% identity (97.907% similar) in 430 aa overlap (4-426:1372-1801) 10 20 mKIAA1 KKNKLGGGDTTEHIQTHFESKMEIPP------- .:::::::::::::::::::::: gi|114 KIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP 1350 1360 1370 1380 1390 1400 30 40 50 60 70 80 mKIAA1 LSSTGKKKELEGKGDSEEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQ :::.:.::: ::::::::: ::::::::::::::::::::::.::::::.:.:::::::: gi|114 LSSAGRKKEQEGKGDSEEQQEKSIIATIDDVLSARPGALPEDANPGPQTESSKFPFGIQQ 1410 1420 1430 1440 1450 1460 90 100 110 120 130 140 mKIAA1 AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AKSHRNIKLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP 1470 1480 1490 1500 1510 1520 150 160 170 180 190 200 mKIAA1 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA 1530 1540 1550 1560 1570 1580 210 220 230 240 250 260 mKIAA1 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL 1590 1600 1610 1620 1630 1640 270 280 290 300 310 320 mKIAA1 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAI :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|114 SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAI 1650 1660 1670 1680 1690 1700 330 340 350 360 370 380 mKIAA1 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVD 1710 1720 1730 1740 1750 1760 390 400 410 420 mKIAA1 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL :::::::::::::::::::::::::::::::::::::::: gi|114 ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL 1770 1780 1790 1800 426 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 08:15:23 2009 done: Fri Mar 13 08:22:01 2009 Total Scan time: 898.210 Total Display time: 0.200 Function used was FASTA [version 34.26.5 April 26, 2007]