# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpk02033.fasta.nr -Q ../query/mKIAA0328.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0328, 311 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920939 sequences Expectation_n fit: rho(ln(x))= 5.2550+/-0.000186; mu= 9.5692+/- 0.010 mean_var=77.1785+/-14.685, 0's: 41 Z-trim: 46 B-trim: 0 in 0/66 Lambda= 0.145991 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|149255226|ref|XP_892815.2| PREDICTED: similar t ( 787) 2030 436.9 5.9e-120 gi|81866774|sp|Q8K4E0.1|ALMS1_MOUSE RecName: Full= (3251) 1993 429.6 3.9e-117 gi|153791438|ref|NP_660258.2| Alstrom syndrome 1 [ (3251) 1993 429.6 3.9e-117 gi|26334659|dbj|BAC31030.1| unnamed protein produc ( 278) 1816 391.5 9.8e-107 gi|194671128|ref|XP_612325.4| PREDICTED: similar t (3817) 1403 305.4 1.1e-79 gi|194220607|ref|XP_001491788.2| PREDICTED: Alstro (3797) 1399 304.5 2e-79 gi|73980988|ref|XP_533005.2| PREDICTED: similar to (4146) 1357 295.7 9.8e-77 gi|148666723|gb|EDK99139.1| Alstrom syndrome 1 hom (3204) 1258 274.8 1.5e-70 gi|109103382|ref|XP_001105030.1| PREDICTED: simila (4129) 1093 240.1 5.4e-60 gi|109103380|ref|XP_001105121.1| PREDICTED: simila (4171) 1093 240.1 5.4e-60 gi|110349786|ref|NP_055935.4| ALMS1 [Homo sapiens] (4169) 1042 229.4 9.2e-57 gi|119620136|gb|EAW99730.1| Alstrom syndrome 1, is (4167) 1038 228.5 1.7e-56 gi|90109809|sp|Q8TCU4.2|ALMS1_HUMAN RecName: Full= (4167) 1038 228.5 1.7e-56 gi|20067381|emb|CAD10391.2| ALMS1 protein [Homo sa (4169) 1038 228.5 1.7e-56 gi|189526790|ref|XP_690375.3| PREDICTED: si:ch211- (1887) 647 145.9 5.6e-32 gi|220678564|emb|CAX14582.1| novel protein [Danio (1473) 633 142.9 3.6e-31 gi|114578084|ref|XP_001151097.1| PREDICTED: hypoth ( 208) 554 125.6 8.1e-27 gi|114578082|ref|XP_530465.2| PREDICTED: hypotheti ( 219) 554 125.6 8.4e-27 gi|119620132|gb|EAW99726.1| LOC200420, isoform CRA ( 210) 539 122.4 7.3e-26 gi|119620131|gb|EAW99725.1| LOC200420, isoform CRA ( 221) 539 122.4 7.6e-26 gi|74732239|sp|Q96L16.1|ALM1L_HUMAN RecName: Full= ( 210) 528 120.1 3.6e-25 gi|118090898|ref|XP_420887.2| PREDICTED: similar t (2322) 503 115.6 8.8e-23 gi|169146736|emb|CAQ15179.1| novel protein similar ( 914) 491 112.8 2.5e-22 gi|47205139|emb|CAF92779.1| unnamed protein produc ( 770) 473 109.0 3e-21 gi|126305534|ref|XP_001374580.1| PREDICTED: simila (2147) 354 84.2 2.3e-13 gi|210097307|gb|EEA45437.1| hypothetical protein B (2857) 342 81.8 1.7e-12 gi|12855412|dbj|BAB30328.1| unnamed protein produc ( 285) 299 72.0 1.5e-10 gi|149061357|gb|EDM11780.1| rCG47659, isoform CRA_ ( 285) 297 71.6 2e-10 gi|148685844|gb|EDL17791.1| mCG125306, isoform CRA ( 644) 299 72.2 2.8e-10 gi|149061358|gb|EDM11781.1| rCG47659, isoform CRA_ ( 680) 297 71.8 4e-10 gi|189442037|gb|AAI67765.1| Adam12 protein [Rattus ( 691) 297 71.8 4e-10 gi|57209384|emb|CAI40684.1| novel protein [Homo sa ( 241) 289 69.8 5.7e-10 gi|210097490|gb|EEA45617.1| hypothetical protein B ( 113) 285 68.7 5.8e-10 gi|18088970|gb|AAH21140.1| C10orf90 protein [Homo ( 244) 289 69.8 5.8e-10 gi|198436022|ref|XP_002127193.1| PREDICTED: simila (1661) 298 72.4 6.8e-10 gi|55960306|emb|CAI12407.1| novel protein [Homo sa ( 652) 289 70.1 1.2e-09 gi|119569585|gb|EAW49200.1| chromosome 10 open rea ( 658) 289 70.1 1.2e-09 gi|223461331|gb|AAI40899.1| Chromosome 10 open rea ( 699) 289 70.2 1.3e-09 gi|143377520|sp|Q96M02.2|CJ090_HUMAN RecName: Full ( 699) 289 70.2 1.3e-09 gi|194387204|dbj|BAG59968.1| unnamed protein produ ( 796) 289 70.2 1.4e-09 gi|114633309|ref|XP_001139982.1| PREDICTED: hypoth ( 652) 286 69.5 1.9e-09 gi|109090933|ref|XP_001088751.1| PREDICTED: simila ( 698) 286 69.5 2e-09 gi|109090937|ref|XP_001088646.1| PREDICTED: simila ( 698) 286 69.5 2e-09 gi|114633303|ref|XP_001140321.1| PREDICTED: hypoth ( 699) 286 69.5 2e-09 gi|114633307|ref|XP_508108.2| PREDICTED: hypotheti ( 714) 286 69.5 2e-09 gi|114633305|ref|XP_001140150.1| PREDICTED: hypoth ( 738) 286 69.6 2.1e-09 gi|109090935|ref|XP_001088534.1| PREDICTED: simila ( 757) 286 69.6 2.1e-09 gi|109090931|ref|XP_001088876.1| PREDICTED: simila ( 795) 286 69.6 2.2e-09 gi|114633301|ref|XP_001140407.1| PREDICTED: hypoth ( 796) 286 69.6 2.2e-09 gi|73998998|ref|XP_535059.2| PREDICTED: similar to ( 668) 284 69.1 2.6e-09 >>gi|149255226|ref|XP_892815.2| PREDICTED: similar to Al (787 aa) initn: 2030 init1: 2030 opt: 2030 Z-score: 2309.9 bits: 436.9 E(): 5.9e-120 Smith-Waterman score: 2030; 100.000% identity (100.000% similar) in 308 aa overlap (4-311:480-787) 10 20 30 mKIAA0 KFYVANHMTSSDSVSSPGSLLSLDSALSNEETV :::::::::::::::::::::::::::::: gi|149 LEKPCKHNRKALNTACPQMTSEHSRRRHIQVANHMTSSDSVSSPGSLLSLDSALSNEETV 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA0 RMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKFLS 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA0 NYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWREP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWREP 570 580 590 600 610 620 160 170 180 190 200 210 mKIAA0 LREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRLK 630 640 650 660 670 680 220 230 240 250 260 270 mKIAA0 LLVQERKLQSLFQSEREALFHSARPLPRRVLLAVQKNKPIGKKEMIQRTRRIYEQLPEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LLVQERKLQSLFQSEREALFHSARPLPRRVLLAVQKNKPIGKKEMIQRTRRIYEQLPEVK 690 700 710 720 730 740 280 290 300 310 mKIAA0 KKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD :::::::::::::::::::::::::::::::::::::: gi|149 KKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD 750 760 770 780 >>gi|81866774|sp|Q8K4E0.1|ALMS1_MOUSE RecName: Full=Alst (3251 aa) initn: 1993 init1: 1993 opt: 1993 Z-score: 2259.3 bits: 429.6 E(): 3.9e-117 Smith-Waterman score: 1993; 98.701% identity (99.026% similar) in 308 aa overlap (4-311:2944-3251) 10 20 30 mKIAA0 KFYVANHMTSSDSVSSPGSLLSLDSALSNEETV :::::::::::::::::::::::::::::: gi|818 LEQPCKHNRKALNTACPQMTSEHSRRRHIQVANHMTSSDSVSSPGSLLSLDSALSNEETV 2920 2930 2940 2950 2960 2970 40 50 60 70 80 90 mKIAA0 RMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKFLS ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|818 RMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSDVTSSSEEKAKEKKFLS 2980 2990 3000 3010 3020 3030 100 110 120 130 140 150 mKIAA0 NYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWREP ::::::::::::::::::::::::::.:::::::::::::::: :::::::::::::::: gi|818 NYLQTKNLRKNKPNPCAGVSWFVPVESGQSGSKKENLPKIYRPVISWFEPVTKTKPWREP 3040 3050 3060 3070 3080 3090 160 170 180 190 200 210 mKIAA0 LREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRLK 3100 3110 3120 3130 3140 3150 220 230 240 250 260 270 mKIAA0 LLVQERKLQSLFQSEREALFHSARPLPRRVLLAVQKNKPIGKKEMIQRTRRIYEQLPEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LLVQERKLQSLFQSEREALFHSARPLPRRVLLAVQKNKPIGKKEMIQRTRRIYEQLPEVK 3160 3170 3180 3190 3200 3210 280 290 300 310 mKIAA0 KKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD ::::::::::::::: :::::::::::::::::::::: gi|818 KKREEEKRKSEYKSYWLRAQHYKMKVTNHLLGRKVPWD 3220 3230 3240 3250 >>gi|153791438|ref|NP_660258.2| Alstrom syndrome 1 [Mus (3251 aa) initn: 1993 init1: 1993 opt: 1993 Z-score: 2259.3 bits: 429.6 E(): 3.9e-117 Smith-Waterman score: 1993; 98.701% identity (99.026% similar) in 308 aa overlap (4-311:2944-3251) 10 20 30 mKIAA0 KFYVANHMTSSDSVSSPGSLLSLDSALSNEETV :::::::::::::::::::::::::::::: gi|153 LEQPCKHNRKALNTACPQMTSEHSRRRHIQVANHMTSSDSVSSPGSLLSLDSALSNEETV 2920 2930 2940 2950 2960 2970 40 50 60 70 80 90 mKIAA0 RMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKFLS ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|153 RMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSDVTSSSEEKAKEKKFLS 2980 2990 3000 3010 3020 3030 100 110 120 130 140 150 mKIAA0 NYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWREP ::::::::::::::::::::::::::.:::::::::::::::: :::::::::::::::: gi|153 NYLQTKNLRKNKPNPCAGVSWFVPVESGQSGSKKENLPKIYRPVISWFEPVTKTKPWREP 3040 3050 3060 3070 3080 3090 160 170 180 190 200 210 mKIAA0 LREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 LREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRLK 3100 3110 3120 3130 3140 3150 220 230 240 250 260 270 mKIAA0 LLVQERKLQSLFQSEREALFHSARPLPRRVLLAVQKNKPIGKKEMIQRTRRIYEQLPEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 LLVQERKLQSLFQSEREALFHSARPLPRRVLLAVQKNKPIGKKEMIQRTRRIYEQLPEVK 3160 3170 3180 3190 3200 3210 280 290 300 310 mKIAA0 KKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD ::::::::::::::: :::::::::::::::::::::: gi|153 KKREEEKRKSEYKSYWLRAQHYKMKVTNHLLGRKVPWD 3220 3230 3240 3250 >>gi|26334659|dbj|BAC31030.1| unnamed protein product [M (278 aa) initn: 1816 init1: 1816 opt: 1816 Z-score: 2072.6 bits: 391.5 E(): 9.8e-107 Smith-Waterman score: 1816; 98.561% identity (98.921% similar) in 278 aa overlap (34-311:1-278) 10 20 30 40 50 60 mKIAA0 VANHMTSSDSVSSPGSLLSLDSALSNEETVRMVSKGVQAGNLEIVAGVKKYTQDVGVTFP :::::::::::::::::::::::::::::: gi|263 RMVSKGVQAGNLEIVAGVKKYTQDVGVTFP 10 20 30 70 80 90 100 110 120 mKIAA0 TPSSSEARLEEDSGVTSSSEEKAKEKKFLSNYLQTKNLRKNKPNPCAGVSWFVPVENGQS ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::.::: gi|263 TPSSSEARLEEDSDVTSSSEEKAKEKKFLSNYLQTKNLRKNKPNPCAGVSWFVPVESGQS 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 GSKKENLPKIYRPGISWFEPVTKTKPWREPLREQNWQAQCMNSRGSLGGPGRDSGQVSLR ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|263 GSKKENLPKIYRPVISWFEPVTKTKPWREPLREQNWQAQCMNSRGSLGGPGRDSGQVSLR 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 PFVRATLQESLQLHRPDFISHSGERIKRLKLLVQERKLQSLFQSEREALFHSARPLPRRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 PFVRATLQESLQLHRPDFISHSGERIKRLKLLVQERKLQSLFQSEREALFHSARPLPRRV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 LLAVQKNKPIGKKEMIQRTRRIYEQLPEVKKKREEEKRKSEYKSYRLRAQHYKMKVTNHL ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: gi|263 LLAVQKNKPIGKKEMIQRTRRIYEQLPEVKKKREEEKRKSEYKSYWLRAQHYKMKVTNHL 220 230 240 250 260 270 310 mKIAA0 LGRKVPWD :::::::: gi|263 LGRKVPWD >>gi|194671128|ref|XP_612325.4| PREDICTED: similar to AL (3817 aa) initn: 1144 init1: 767 opt: 1403 Z-score: 1586.8 bits: 305.4 E(): 1.1e-79 Smith-Waterman score: 1403; 68.339% identity (87.774% similar) in 319 aa overlap (4-311:3504-3817) 10 20 30 mKIAA0 KFYVANHMTSSDSVSSP-GSLLSLDSALSNEET :..:. ::::::: .:. : .:.: :... gi|194 LEKRSKKNKKALNTGYPQITSEHTRRKHIQVTDHV-SSDSVSSSTSSFWSSNSTLCNKQN 3480 3490 3500 3510 3520 3530 40 50 60 70 80 90 mKIAA0 VRMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKFL ..:..:::::::::::.::.: :.:::.:::::::::::.:::: ::: :::: .::..: gi|194 THMLNKGVQAGNLEIVSGVRKNTRDVGMTFPTPSSSEARVEEDSDVTSWSEEKIEEKRLL 3540 3550 3560 3570 3580 3590 100 110 120 130 140 150 mKIAA0 SNYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWRE ..:: :.:.::: . : :::::::::: .:: ::::.::.. ::.::: :.:.:::::: gi|194 TSYLGDKKLKKNKKTCCEGVSWFVPVENMKSGPKKENMPKLHGPGVSWFAPITNTKPWRE 3600 3610 3620 3630 3640 3650 160 170 180 190 200 210 mKIAA0 PLREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRL ::::::::.: :.:..::.:::.. :.::::::::::::::::::::.:::::::: gi|194 PLREQNWQGQHMDSHSSLAGPGKE----PLKPFVRATLQESLQLHRPDFISRSGERIKRL 3660 3670 3680 3690 3700 220 230 240 250 260 mKIAA0 KLLVQERKLQSLFQSEREALFHSAR-------P---LPRRVLLAVQKNKPIGKKEMIQRT ::.:::::::...::::::::.... : : .: .::.::..:.::::::::. gi|194 KLIVQERKLQNMLQSEREALFNTVQEWQGYRDPVHLLRKRGFLAAQKKRPVGKKEMIQRS 3710 3720 3730 3740 3750 3760 270 280 290 300 310 mKIAA0 RRIYEQLPEVKKKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD .:::::::::.::::::::.::::::::::: :: ::::.::::::::: gi|194 KRIYEQLPEVQKKREEEKRRSEYKSYRLRAQLYKKKVTNQLLGRKVPWD 3770 3780 3790 3800 3810 >>gi|194220607|ref|XP_001491788.2| PREDICTED: Alstrom sy (3797 aa) initn: 882 init1: 489 opt: 1399 Z-score: 1582.3 bits: 304.5 E(): 2e-79 Smith-Waterman score: 1399; 68.966% identity (85.266% similar) in 319 aa overlap (4-311:3484-3797) 10 20 30 mKIAA0 KFYVANHMTSSDSVSSP-GSLLSLDSALSNEET ::::: ::::.:: .:. : :.: :... gi|194 LEKRSRKNKKVLDTCRPQITSEHTRRKHIQVANHMISSDSISSSTSSFWSSTSTLCNKQN 3460 3470 3480 3490 3500 3510 40 50 60 70 80 90 mKIAA0 VRMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKFL :.:..::.:::::::: ::.:.:.:::.:::::::.::: :::: ::: :::. .::..: gi|194 VHMLNKGIQAGNLEIVNGVRKHTRDVGMTFPTPSSTEAR-EEDSDVTSWSEENIEEKRLL 3520 3530 3540 3550 3560 3570 100 110 120 130 140 150 mKIAA0 SNYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWRE .::: : ::::. . :::::::::: .: :::::::. :::::: :.:.:::::: gi|194 TNYLGDKRLRKNEQSCREGVSWFVPVENVKSCPKKENLPKLRGPGISWFAPITSTKPWRE 3580 3590 3600 3610 3620 3630 160 170 180 190 200 210 mKIAA0 PLREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRL ::::::::.: :...:::.: ::: ::::::::::::::::::::::.: :::::: gi|194 PLREQNWQGQHMDNHGSLAGSGRD----PLRPFVRATLQESLQLHRPDFISRSRERIKRL 3640 3650 3660 3670 3680 220 230 240 250 260 mKIAA0 KLLVQERKLQSLFQSEREALFHSAR----------PLPRRVLLAVQKNKPIGKKEMIQRT ::.:::::::...::::::::...: :::.: ..:.:::.::::::::::. gi|194 KLIVQERKLQNMLQSEREALFNAVRERQGYRDPMCPLPKRGFMAAQKNRPIGKKEMIQRS 3690 3700 3710 3720 3730 3740 270 280 290 300 310 mKIAA0 RRIYEQLPEVKKKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD .:::::::::.::::::::. :::::::::: .: ::.:.::::::::: gi|194 KRIYEQLPEVQKKREEEKRRLEYKSYRLRAQLFKKKVANQLLGRKVPWD 3750 3760 3770 3780 3790 >>gi|73980988|ref|XP_533005.2| PREDICTED: similar to ALM (4146 aa) initn: 1063 init1: 709 opt: 1357 Z-score: 1533.9 bits: 295.7 E(): 9.8e-77 Smith-Waterman score: 1357; 66.771% identity (85.266% similar) in 319 aa overlap (4-311:3832-4146) 10 20 30 mKIAA0 KFYVANHMTSSDSVSSP-GSLLSLDSALSNEET ::.:. ::::::: .:. : .:.: : .. gi|739 LERRSKKNKKALNMNHPQMTSEHTRRKHIQVADHVISSDSVSSSTSSFWSSSSTLCNMQN 3810 3820 3830 3840 3850 3860 40 50 60 70 80 90 mKIAA0 VRMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKFL :.:..:.::::::::: ::::.:.:::.:::::::::::.:::: .:: :::: .::..: gi|739 VQMLNKAVQAGNLEIVNGVKKHTRDVGMTFPTPSSSEARIEEDSDMTSWSEEKIEEKRLL 3870 3880 3890 3900 3910 3920 100 110 120 130 140 150 mKIAA0 SNYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWRE .::: :.::::: . : :::::::::: .: :::::::.. ::: :: :.:.:::::: gi|739 TNYLGDKKLRKNKHSCCEGVSWFVPVENVKSEPKKENLPKLHGPGICWFAPITNTKPWRE 3930 3940 3950 3960 3970 3980 160 170 180 190 200 210 mKIAA0 PLREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKRL ::::::::.: .... :.:: :. :::::::::::::.::::::::.:::::::: gi|739 PLREQNWQGQHVDGHRPLAGPDRE----RLRPFVRATLQESLHLHRPDFISRSGERIKRL 3990 4000 4010 4020 4030 220 230 240 250 260 mKIAA0 KLLVQERKLQSLFQSEREALFHSAR-------P---LPRRVLLAVQKNKPIGKKEMIQRT ::.:::::::....:::::::. .: : ::.. .: ..:..::::::::::. gi|739 KLIVQERKLQNMLESEREALFNVSREWQGYRDPTHLLPKKGFLDARKSRPIGKKEMIQRS 4040 4050 4060 4070 4080 4090 270 280 290 300 310 mKIAA0 RRIYEQLPEVKKKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD .:::::::::..:::::::. :::::::::: .: ::::.::::::::. gi|739 KRIYEQLPEVQRKREEEKRRLEYKSYRLRAQLFKKKVTNQLLGRKVPWN 4100 4110 4120 4130 4140 >>gi|148666723|gb|EDK99139.1| Alstrom syndrome 1 homolog (3204 aa) initn: 1489 init1: 1245 opt: 1258 Z-score: 1422.8 bits: 274.8 E(): 1.5e-70 Smith-Waterman score: 1467; 78.662% identity (79.299% similar) in 314 aa overlap (2-311:2948-3204) 10 20 30 mKIAA0 KFYVANHMTSSDSVSSPGSLLSLDSALSNEE : :::::::::::::::::::::::::::: gi|148 CKHNRKALNTACPQMTSEHSRRRHIHLSSFFQVANHMTSSDSVSSPGSLLSLDSALSNEE 2920 2930 2940 2950 2960 2970 40 50 60 70 80 90 mKIAA0 TVRMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEKKF ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: gi|148 TVRMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSDVTSSSEEKAKEKKF 2980 2990 3000 3010 3020 3030 100 110 120 130 140 150 mKIAA0 LSNYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LSNYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKPWR 3040 3050 3060 3070 3080 3090 160 170 180 190 200 210 mKIAA0 EPLREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERIKR :::::::::::::::::::::::::::::::::::::::: gi|148 EPLREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQ-------------------- 3100 3110 3120 3130 220 230 240 250 260 mKIAA0 LKLLVQERKLQSLFQSEREALFHSARPLPRR----VLLAVQKNKPIGKKEMIQRTRRIYE ::::::::::: .:.: ::::::::: gi|148 LKLLVQERKLQ--------------KPVPDLLSCLVLLAVQKNK---------------- 3140 3150 3160 270 280 290 300 310 mKIAA0 QLPEVKKKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD ::::::::::::::::::::::::::::::::::::: gi|148 -------KREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD 3170 3180 3190 3200 >>gi|109103382|ref|XP_001105030.1| PREDICTED: similar to (4129 aa) initn: 1031 init1: 1031 opt: 1093 Z-score: 1233.5 bits: 240.1 E(): 5.4e-60 Smith-Waterman score: 1473; 69.565% identity (88.199% similar) in 322 aa overlap (1-311:3808-4129) 10 20 mKIAA0 KFYVANHMTSSDSVSSPGS-LLSLDSALSN .. ::::. ::::.:: .: .:: .:.. : gi|109 RRYLEKRSKHSKKVLNTGHPLVTSEHTRRRRIQVANHVISSDSISSSASSFLSSNSTFCN 3780 3790 3800 3810 3820 3830 30 40 50 60 70 80 mKIAA0 EETVRMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEK .....:..::.:::::::: :.::.:.:::.::::::::::.::::: ::: :::: .:: gi|109 KQNAHMLNKGIQAGNLEIVNGAKKHTRDVGITFPTPSSSEAKLEEDSDVTSWSEEKHEEK 3840 3850 3860 3870 3880 3890 90 100 110 120 130 140 mKIAA0 KFLSNYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKP ....: ..:.::: : :::::::::: .:::::::.:: . ::.:::::.::::: gi|109 LLFTSYPGDRKLKKNKKNSHEGVSWFVPVENVESGSKKENVPKTWGPGVSWFEPITKTKP 3900 3910 3920 3930 3940 3950 150 160 170 180 190 200 mKIAA0 WREPLREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERI :::::::::::.: ...::::.::::..:. :.::::::::::::.::::::: ::::: gi|109 WREPLREQNWQGQHLDGRGSLAGPGREDGRDPLKPFVRATLQESLQFHRPDFISSSGERI 3960 3970 3980 3990 4000 4010 210 220 230 240 250 mKIAA0 KRLKLLVQERKLQSLFQSEREALF--------HSAR--PLPRRVLLAVQKNKPIGKKEMI :::::.::::::::..::::..:: :. : :::.::.:::::.:::.::::: gi|109 KRLKLIVQERKLQSMLQSERDVLFNIDRERQGHQNRMRPLPKRVFLAVQKSKPISKKEMI 4020 4030 4040 4050 4060 4070 260 270 280 290 300 310 mKIAA0 QRTRRIYEQLPEVKKKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD ::..:::::::::.:::::::::::::::::::: :: .:::.::::::::: gi|109 QRSKRIYEQLPEVQKKREEEKRKSEYKSYRLRAQLYKKRVTNQLLGRKVPWD 4080 4090 4100 4110 4120 >>gi|109103380|ref|XP_001105121.1| PREDICTED: similar to (4171 aa) initn: 1031 init1: 1031 opt: 1093 Z-score: 1233.4 bits: 240.1 E(): 5.4e-60 Smith-Waterman score: 1473; 69.565% identity (88.199% similar) in 322 aa overlap (1-311:3850-4171) 10 20 mKIAA0 KFYVANHMTSSDSVSSPGS-LLSLDSALSN .. ::::. ::::.:: .: .:: .:.. : gi|109 RRYLEKRSKHSKKVLNTGHPLVTSEHTRRRRIQVANHVISSDSISSSASSFLSSNSTFCN 3820 3830 3840 3850 3860 3870 30 40 50 60 70 80 mKIAA0 EETVRMVSKGVQAGNLEIVAGVKKYTQDVGVTFPTPSSSEARLEEDSGVTSSSEEKAKEK .....:..::.:::::::: :.::.:.:::.::::::::::.::::: ::: :::: .:: gi|109 KQNAHMLNKGIQAGNLEIVNGAKKHTRDVGITFPTPSSSEAKLEEDSDVTSWSEEKHEEK 3880 3890 3900 3910 3920 3930 90 100 110 120 130 140 mKIAA0 KFLSNYLQTKNLRKNKPNPCAGVSWFVPVENGQSGSKKENLPKIYRPGISWFEPVTKTKP ....: ..:.::: : :::::::::: .:::::::.:: . ::.:::::.::::: gi|109 LLFTSYPGDRKLKKNKKNSHEGVSWFVPVENVESGSKKENVPKTWGPGVSWFEPITKTKP 3940 3950 3960 3970 3980 3990 150 160 170 180 190 200 mKIAA0 WREPLREQNWQAQCMNSRGSLGGPGRDSGQVSLRPFVRATLQESLQLHRPDFISHSGERI :::::::::::.: ...::::.::::..:. :.::::::::::::.::::::: ::::: gi|109 WREPLREQNWQGQHLDGRGSLAGPGREDGRDPLKPFVRATLQESLQFHRPDFISSSGERI 4000 4010 4020 4030 4040 4050 210 220 230 240 250 mKIAA0 KRLKLLVQERKLQSLFQSEREALF--------HSAR--PLPRRVLLAVQKNKPIGKKEMI :::::.::::::::..::::..:: :. : :::.::.:::::.:::.::::: gi|109 KRLKLIVQERKLQSMLQSERDVLFNIDRERQGHQNRMRPLPKRVFLAVQKSKPISKKEMI 4060 4070 4080 4090 4100 4110 260 270 280 290 300 310 mKIAA0 QRTRRIYEQLPEVKKKREEEKRKSEYKSYRLRAQHYKMKVTNHLLGRKVPWD ::..:::::::::.:::::::::::::::::::: :: .:::.::::::::: gi|109 QRSKRIYEQLPEVQKKREEEKRKSEYKSYRLRAQLYKKRVTNQLLGRKVPWD 4120 4130 4140 4150 4160 4170 311 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 02:48:07 2009 done: Sat Mar 14 02:53:54 2009 Total Scan time: 802.050 Total Display time: 0.220 Function used was FASTA [version 34.26.5 April 26, 2007]