FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1098.ptfa, 193 aa
 vs ./tmplib.26680 library

1768824 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.4551+/-0.00604; mu= 0.9098+/- 0.404
 mean_var=183.5482+/-43.310, 0's: 0 Z-trim: 7  B-trim: 0 in 0/36
 Lambda= 0.0947

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4179  ( 500 res)   mid07007                   ( 500)  334   57   2e-09


>>mKIAA4179  ( 500 res)   mid07007                        (500 aa)
 initn: 263 init1: 133 opt: 334  Z-score: 261.7  bits: 56.6 E(): 2e-09
Smith-Waterman score: 334;  31.410% identity (32.667% ungapped) in 156 aa overlap (4-156:11-163)

                      10        20          30        40        50 
mKIAA1        TPVVVTAAAPAMEPGPSVSPGPS--RSFKEELLCAVCYDPFRDAVTLRCGHNF
                 :. : .  .: : :..   .  .... :  :.:: . ... : ..:::::
mKIAA4 ARHSGTRSREVIMAETSLLEAGTSAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNF
               10        20        30        40        50        60

              60         70        80        90       100       110
mKIAA1 CRRCVSGCWE-VQTTPSCPVCKERAVPGELRTNHTLNNLVETLLREEAEGARWTGRRSPR
       :. :..  :: ..    ::::.. .    :: :. :...:: . ..     :    :.  
mKIAA4 CKACITRWWEDLERDFPCPVCRKTSRYRSLRPNRQLGSMVE-IAKQLQTVKRKI--RDES
               70        80        90       100        110         

              120       130       140       150       160       170
mKIAA1 PCRAHRAPLTLFCLEDKELLCCACQADARHQEHRVQPIKDTAQDFRVSTAPARPGDPRPA
        :  :. ::.::: ::.: .:  :  .  :. : : :. :..:...              
mKIAA4 LCSQHHEPLSLFCYEDQEAVCLICAISHTHRPHTVVPMDDATQEYKEKLQKCLEPLEQKL
       120       130       140       150       160       170       

              180       190                                        
mKIAA1 PPPPPGLATILPPVQANLNNDGE                                     
                                                                   
mKIAA4 QEITCCKASEEKKPGELKRLVESRRQQILKEFEELHRRLDEEQQTLLSRLEEEEQDILQR
       180       190       200       210       220       230       




193 residues in 1 query   sequences
1768824 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:36:04 2006 done: Mon Mar 27 10:36:05 2006
 Scan time:  0.420 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]