FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0442.ptfa, 414 aa
 vs ./tmplib.26680 library

1768603 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.4802+/-0.0076; mu= 0.3372+/- 0.509
 mean_var=278.8665+/-67.599, 0's: 0 Z-trim: 5  B-trim: 109 in 1/35
 Lambda= 0.0768

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1545  ( 488 res)   mbh00801                   ( 488)  218   37  0.0038


>>mKIAA1545  ( 488 res)   mbh00801                        (488 aa)
 initn: 425 init1: 147 opt: 218  Z-score: 148.9  bits: 36.8 E(): 0.0038
Smith-Waterman score: 296;  30.649% identity (49.104% ungapped) in 447 aa overlap (4-414:174-488)

                                          10               20      
mKIAA0                            KRHPSHPSPAP-PVPV-----SAL-GHNRSSTD
                                     :: :.: : : ::     ::: .:.:   .
mKIAA1 GSSIFAPKEGTALLGLPSPHDAWNRLHRVPPSFPTPPPWPKPVDTERLSALTNHDR---E
           150       160       170       180       190          200

         30        40         50                            60     
mKIAA0 PTTRGHLNTEAREKDK-PKEKERDH------------------SG--SRKDLTTE---EH
       :  .:.   : .:.:   : .  .:                  ::  ::  . ::   : 
mKIAA1 PD-KGQ---EEHERDLLEKTRLLSHGSPVAPVGHPISSLLQRGSGELSRPGVLTEREAET
                  210       220       230       240       250      

             70         80        90       100       110       120 
mKIAA0 KAKESHLPER-DGHSHEGRAAGEEPKQLSRVPSPYVRTPGVDSTRPNSTSSREAEPRKGE
       ..:::: : . ::            :  .: :::: ..   :  :  .  .::.    :.
mKIAA1 RVKESHSPSKEDG-----------AKLAARPPSPYCKAALGDCLRLAGLLGRES----GK
        260                  270       280       290           300 

             130       140       150       160       170       180 
mKIAA0 PAYENPKKNAEVKVKEERKEDHDLPTEAPQAHRTSEAPPPSSSASASVHPGPLASMPMTV
        . . :.  ..:::::::.::     :.:.             ...:::           
mKIAA1 QTPDRPQ--GDVKVKEERRED-----ETPDL------------TGVSVHS----------
               310       320                        330            

             190       200       210       220       230       240 
mKIAA0 GVTGIHAMNSIGSLDRTRMVTPFMGLSPIPGGERFPYPSFHWDPMRDPLRDPYRDLDMHR
         :. :                 :::.           .: :::   : :: :: :.. :
mKIAA1 --TATH-----------------MGLGTA---------GFVWDP---P-RDTYRGLELPR
                               340                    350       360

             250       260        270       280       290       300
mKIAA0 RDPLGRDFLLRNDPLHRLSTPRLYE-ADRSFRDREPHDYSHHHHHHHHPLAVDPRREHER
       :.       .   :     .:  .: ..:..:::::::::             :.: .: 
mKIAA1 RS-------FPAPPPAAGPSP--FELSERAYRDREPHDYS-------------PERLQE-
                     370         380       390                     

              310       320       330       340       350       360
mKIAA0 GGHLDERERLHVLREDYEHPRLHPVHPASLDGHLPHPSLLTPGLPSMHYPRISPTAGHQN
                  : ::. :. :.     :.:             ::..::::..: : : .
mKIAA1 -----------VRREELERARVPDSDAAAL-------------LPAVHYPRLAPGALH-G
                  400       410                    420       430   

              370        380       390         400       410    
mKIAA0 GLLNKTPPTAA-LSAPPPLISTLGGRPGSPR--RTTPLSAEIRERPPSHTLKDIEAR
       .:: .:::.:: :.:::::. : :: :  :   :::   .: ::  :. .  ..:::
mKIAA1 ALLARTPPAAAVLGAPPPLV-TAGGVPTPPAHPRTTLGPGEAREYSPACNPPEVEAR
            440       450        460       470       480        




414 residues in 1 query   sequences
1768603 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:20:51 2006 done: Mon Mar 27 10:20:52 2006
 Scan time:  0.630 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]