# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpk00905.fasta.nr -Q ../query/mKIAA0186.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0186, 168 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921193 sequences Expectation_n fit: rho(ln(x))= 4.4915+/-0.000179; mu= 9.7663+/- 0.010 mean_var=56.9039+/-11.044, 0's: 41 Z-trim: 42 B-trim: 0 in 0/68 Lambda= 0.170021 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|61215293|sp|Q9CZ15.1|PSF1_MOUSE RecName: Full=D ( 196) 1131 285.1 4.1e-75 gi|194224079|ref|XP_001490687.2| PREDICTED: simila ( 177) 1107 279.1 2.2e-73 gi|73989584|ref|XP_848652.1| PREDICTED: similar to ( 196) 1090 275.0 4.3e-72 gi|109093199|ref|XP_001107106.1| PREDICTED: simila ( 260) 1090 275.1 5.4e-72 gi|15214812|gb|AAH12542.1| GINS1 protein [Homo sap ( 196) 1082 273.0 1.7e-71 gi|182676481|sp|A4IFH4.1|PSF1_BOVIN RecName: Full= ( 196) 1076 271.6 4.7e-71 gi|197246218|gb|AAI68788.1| DNA replication comple ( 196) 1054 266.2 2e-69 gi|126304265|ref|XP_001382085.1| PREDICTED: simila ( 196) 1050 265.2 3.9e-69 gi|29365479|dbj|BAC66458.1| Psf1 [Xenopus laevis] ( 196) 1039 262.5 2.5e-68 gi|221220792|gb|ACM09057.1| DNA replication comple ( 196) 1008 254.9 4.9e-66 gi|125834097|ref|XP_001330987.1| PREDICTED: simila ( 196) 995 251.7 4.5e-65 gi|53733728|gb|AAH83239.1| Zgc:101672 [Danio rerio ( 196) 992 251.0 7.4e-65 gi|47222346|emb|CAG05095.1| unnamed protein produc ( 195) 971 245.8 2.6e-63 gi|60099241|emb|CAH65451.1| hypothetical protein [ ( 195) 970 245.6 3.1e-63 gi|224118036|ref|XP_002190051.1| PREDICTED: DNA re ( 173) 963 243.8 9.4e-63 gi|224046938|ref|XP_002197009.1| PREDICTED: DNA re ( 192) 918 232.8 2.1e-59 gi|221221066|gb|ACM09194.1| DNA replication comple ( 157) 889 225.6 2.5e-57 gi|20380632|gb|AAH27537.1| GINS complex subunit 1 ( 163) 813 207.0 1.1e-51 gi|149545044|ref|XP_001519883.1| PREDICTED: simila ( 136) 808 205.7 2.2e-51 gi|148696640|gb|EDL28587.1| mCG16318, isoform CRA_ ( 151) 806 205.2 3.3e-51 gi|73989582|ref|XP_856643.1| PREDICTED: similar to ( 171) 766 195.5 3.3e-48 gi|146387465|pdb|2E9X|A Chain A, The Crystal Struc ( 149) 759 193.7 9.7e-48 gi|150261226|pdb|2EHO|B Chain B, Crystal Structure ( 152) 745 190.3 1.1e-46 gi|115728595|ref|XP_780798.2| PREDICTED: similar t ( 169) 745 190.3 1.1e-46 gi|210122211|gb|EEA69919.1| hypothetical protein B ( 196) 743 189.9 1.8e-46 gi|156211128|gb|EDO32255.1| predicted protein [Nem ( 190) 713 182.5 2.9e-44 gi|198428881|ref|XP_002131593.1| PREDICTED: simila ( 195) 673 172.7 2.7e-41 gi|193896648|gb|EDV95514.1| GH15736 [Drosophila gr ( 200) 660 169.5 2.5e-40 gi|194158746|gb|EDW73647.1| GK16541 [Drosophila wi ( 191) 656 168.5 4.7e-40 gi|194140651|gb|EDW57125.1| GJ16092 [Drosophila vi ( 200) 655 168.3 5.8e-40 gi|193918786|gb|EDW17653.1| GI12793 [Drosophila mo ( 200) 654 168.1 6.8e-40 gi|190623398|gb|EDV38922.1| GF25042 [Drosophila an ( 204) 636 163.6 1.5e-38 gi|194179193|gb|EDW92804.1| GE20973 [Drosophila ya ( 196) 634 163.1 2e-38 gi|194195195|gb|EDX08771.1| GD13488 [Drosophila si ( 196) 634 163.1 2e-38 gi|190652887|gb|EDV50130.1| GG14612 [Drosophila er ( 202) 634 163.2 2.1e-38 gi|10727220|gb|AAF47459.2| Psf1 [Drosophila melano ( 202) 634 163.2 2.1e-38 gi|194127974|gb|EDW50017.1| GM14226 [Drosophila se ( 196) 633 162.9 2.4e-38 gi|212512254|gb|EEB15047.1| DNA replication comple ( 197) 624 160.7 1.1e-37 gi|194110953|gb|EDW32996.1| GL16122 [Drosophila pe ( 202) 624 160.7 1.1e-37 gi|91093649|ref|XP_967779.1| PREDICTED: similar to ( 196) 619 159.5 2.6e-37 gi|66506662|ref|XP_395538.2| PREDICTED: similar to ( 194) 615 158.5 5.1e-37 gi|55244484|gb|EAA05556.3| AGAP010835-PA [Anophele ( 200) 595 153.6 1.6e-35 gi|167880090|gb|EDS43473.1| partner of sld5 [Culex ( 194) 592 152.8 2.5e-35 gi|108884028|gb|EAT48253.1| partner of sld5 [Aedes ( 193) 591 152.6 3e-35 gi|118087783|ref|XP_415001.2| PREDICTED: hypotheti ( 177) 583 150.6 1.1e-34 gi|57103486|ref|XP_534203.1| PREDICTED: similar to ( 162) 580 149.8 1.7e-34 gi|194377666|dbj|BAG57781.1| unnamed protein produ ( 165) 511 132.9 2.1e-29 gi|193657407|ref|XP_001950911.1| PREDICTED: simila ( 193) 506 131.7 5.6e-29 gi|190581554|gb|EDV21630.1| hypothetical protein T ( 111) 479 124.9 3.6e-27 gi|61252281|sp|Q22019.2|PSF1_CAEEL RecName: Full=P ( 201) 449 117.8 9.4e-25 >>gi|61215293|sp|Q9CZ15.1|PSF1_MOUSE RecName: Full=DNA r (196 aa) initn: 1131 init1: 1131 opt: 1131 Z-score: 1504.9 bits: 285.1 E(): 4.1e-75 Smith-Waterman score: 1131; 99.405% identity (100.000% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP :::::::::::::::::::::::::::::::: gi|612 MFCEKAMELVRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 TVKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::::::::::::: gi|612 KCEQLIRQGVLEHVLS 190 >>gi|194224079|ref|XP_001490687.2| PREDICTED: similar to (177 aa) initn: 1107 init1: 1107 opt: 1107 Z-score: 1473.7 bits: 279.1 E(): 2.2e-73 Smith-Waterman score: 1107; 95.833% identity (99.405% similar) in 168 aa overlap (1-168:10-177) 10 20 30 40 50 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIPTIKFRHCALLRNRRCTIAY ::::::::::::::::::::::::.::::::::::::::.::::::::.:: gi|194 MSDELLEDGLRQVLEEMKALYEQNQSDVNEAKSGGRGDLIPTIKFRHCSLLRNRRCTVAY 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA0 LYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKSLATYMRSLGGDEGLDITQD :::::::::::::::::::::.::::::::: :::::::::::::::::::::::::::: gi|194 LYDRLLRIRALRWEYGSVLPNALRFHMSAEEMEWFNHYKKSLATYMRSLGGDEGLDITQD 70 80 90 100 110 120 120 130 140 150 160 mKIAA0 VKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIRQGVLEHVLS .:::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|194 MKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIRQGILEHVLS 130 140 150 160 170 >>gi|73989584|ref|XP_848652.1| PREDICTED: similar to DNA (196 aa) initn: 1090 init1: 1090 opt: 1090 Z-score: 1450.6 bits: 275.0 E(): 4.3e-72 Smith-Waterman score: 1090; 94.048% identity (100.000% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP :::::::::::::::::::::.::.::.:::: gi|739 MFCEKAMELVRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEVKSGGRSDLIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS :::::::.:::::::..:::::::::::::::::::::::.:::::::::.::::::::: gi|739 TIKFRHCSLLRNRRCAVAYLYDRLLRIRALRWEYGSVLPNALRFHMSAEEVEWFNHYKKS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|739 LATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::.:::::::::: gi|739 KCEQLVRQGVLEHVLS 190 >>gi|109093199|ref|XP_001107106.1| PREDICTED: similar to (260 aa) initn: 1090 init1: 1090 opt: 1090 Z-score: 1448.9 bits: 275.1 E(): 5.4e-72 Smith-Waterman score: 1090; 94.048% identity (99.405% similar) in 168 aa overlap (1-168:93-260) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDL ::::::::::::::::::::::::.::.:: gi|109 SAMFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDL 70 80 90 100 110 120 40 50 60 70 80 90 mKIAA0 IPTIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYK :::::::::.::::::::.:::::::::::::::::::.:::.::::::::: ::::.:: gi|109 IPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSILPNALRFHMSAEEMEWFNNYK 130 140 150 160 170 180 100 110 120 130 140 150 mKIAA0 KSLATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLP .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RSLATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLP 190 200 210 220 230 240 160 mKIAA0 RWKCEQLIRQGVLEHVLS :::::::::::::::.:: gi|109 RWKCEQLIRQGVLEHILS 250 260 >>gi|15214812|gb|AAH12542.1| GINS1 protein [Homo sapiens (196 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1440.0 bits: 273.0 E(): 1.7e-71 Smith-Waterman score: 1082; 92.857% identity (99.405% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP ::::::::::::::::::::::::.::.:::: gi|152 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS :::::::.::::::::.:::::::::::::::::::.:::.:::::.::: ::::.::.: gi|152 TIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSILPNALRFHMAAEEMEWFNNYKRS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|152 LATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::::::::::.:: gi|152 KCEQLIRQGVLEHILS 190 >>gi|182676481|sp|A4IFH4.1|PSF1_BOVIN RecName: Full=DNA (196 aa) initn: 1076 init1: 1076 opt: 1076 Z-score: 1432.0 bits: 271.6 E(): 4.7e-71 Smith-Waterman score: 1076; 92.857% identity (99.405% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP ::::::::::::::::::::::::.::::::: gi|182 MFCEKAMELVRELHRAAEGRLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSSGRGDLIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS :::::::.::::.:::.::::::::::::::::::::::..::::::::: .:::.:::: gi|182 TIKFRHCSLLRNQRCTVAYLYDRLLRIRALRWEYGSVLPSALRFHMSAEEMDWFNRYKKS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW :::::::::::::::::::.:::::::::::::::::::::.:::::::::::::::::: gi|182 LATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVEDGTSVLLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::::::.:::::: gi|182 KCEQLIRQGILEHVLS 190 >>gi|197246218|gb|AAI68788.1| DNA replication complex GI (196 aa) initn: 1054 init1: 1054 opt: 1054 Z-score: 1402.9 bits: 266.2 E(): 2e-69 Smith-Waterman score: 1054; 89.286% identity (97.619% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP .:::::::::::::::.::::::: ::.:::: gi|197 MFCEKAIELIRELHRASDGQLPAFNEDGIRQVLEEMKALYEQNQADVNEAKSEGRSDLIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS ::::::: ::::::: .:::::::::::::::::::::::.::::::::: .:::.::.: gi|197 TIKFRHCCLLRNRRCIVAYLYDRLLRIRALRWEYGSVLPNALRFHMSAEEMDWFNQYKRS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW ::::::::::.::::::::.:::::::::::::.::::::.::::..::::::::::::: gi|197 LATYMRSLGGEEGLDITQDMKPPKSLYIEVRCLRDYGEFEIDDGTTILLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::::::::::::: gi|197 KCEQLIRQGVLEHVLS 190 >>gi|126304265|ref|XP_001382085.1| PREDICTED: similar to (196 aa) initn: 1050 init1: 1050 opt: 1050 Z-score: 1397.6 bits: 265.2 E(): 3.9e-69 Smith-Waterman score: 1050; 91.667% identity (97.024% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP .::::::::::::::::::::.:: ::.:::: gi|126 MFCEKAIELIRELHRAPDGQLPAFNDDGIRQVLEEMKALYEQNQSDVNETKSDGRSDLIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS :::::: .::::::: .:::::::::::::::::::::::.::::::.:: ::::.:::: gi|126 TIKFRHSSLLRNRRCIVAYLYDRLLRIRALRWEYGSVLPNALRFHMSSEEIEWFNRYKKS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW :::::: ::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|126 LATYMRCLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::::::::::::: gi|126 KCEQLIRQGVLEHVLS 190 >>gi|29365479|dbj|BAC66458.1| Psf1 [Xenopus laevis] (196 aa) initn: 1039 init1: 1039 opt: 1039 Z-score: 1383.0 bits: 262.5 E(): 2.5e-68 Smith-Waterman score: 1039; 86.905% identity (97.619% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP .::.::::::::::::.::::::. ::.:::: gi|293 MFCEKAIELIRELQRASDGQLPAFNEDGIRQILEEMKALYEQNQADVNEAKTEGRSDLIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS ::::::: ::::::: .::::::::::::::::::::::..::::::.:: .:::.::.: gi|293 TIKFRHCCLLRNRRCIVAYLYDRLLRIRALRWEYGSVLPSALRFHMSTEEMDWFNQYKRS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW ::::::::::.::::::::.:::::::::::::.::::::.::::..::::::::::::: gi|293 LATYMRSLGGEEGLDITQDMKPPKSLYIEVRCLRDYGEFEIDDGTTILLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::::::::::::: gi|293 KCEQLIRQGVLEHVLS 190 >>gi|221220792|gb|ACM09057.1| DNA replication complex GI (196 aa) initn: 1006 init1: 1006 opt: 1008 Z-score: 1341.9 bits: 254.9 E(): 4.9e-66 Smith-Waterman score: 1008; 85.119% identity (95.833% similar) in 168 aa overlap (1-168:29-196) 10 20 30 mKIAA0 LRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP .::::::::::::::::::::::: :...::: gi|221 MFCEKAIEIIRELHRMGDGQLPAFNEDGIRQVLEEMKALYEQNQSDVNEAKSEGKSELIP 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 TIKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGSVLPNSLRFHMSAEETEWFNHYKKS ::::::: ::::.:: :::::::::::.::::::::::...:::: ::: ::::.:::: gi|221 TIKFRHCCLLRNQRCIAAYLYDRLLRIRTLRWEYGSVLPTNIRFHMCAEELEWFNQYKKS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 LATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW :::.::::::.::::::::.:::::::::::::::.::::.:::: .::::::::::::: gi|221 LATFMRSLGGEEGLDITQDMKPPKSLYIEVRCLKDHGEFEIDDGTIILLKKNSQHFLPRW 130 140 150 160 170 180 160 mKIAA0 KCEQLIRQGVLEHVLS :::::::::::::..: gi|221 KCEQLIRQGVLEHIMS 190 168 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 07:21:26 2009 done: Fri Mar 13 07:25:48 2009 Total Scan time: 628.890 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]