FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00161.ptfa, 265 aa
 vs ./tmplib.26680 library

1768752 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.2359+/-0.0048; mu= 12.5542+/- 0.323
 mean_var=105.5661+/-23.926, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1248

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00157  ( 770 res)   mfj31007                   ( 770)  514  103 6.1e-23


>>mFLJ00157  ( 770 res)   mfj31007                        (770 aa)
 initn: 466 init1: 275 opt: 514  Z-score: 504.2  bits: 102.5 E(): 6.1e-23
Smith-Waterman score: 514;  32.955% identity (34.800% ungapped) in 264 aa overlap (8-259:508-769)

                                       10        20             30 
mFLJ00                        LRGDAVAPH-YVPYLLSAFNHQSALRSSV-----SVL
                                     :: :: :... .:. .... :.     . :
mFLJ00 LCLQQMNSFLSRYKDEAQLYKEEHLRNRQHPHCYVQYMIAIINNCQTFKESIISLKRKYL
       480       490       500       510       520       530       

              40          50        60        70        80         
mFLJ00 LPDGEASGVLA-P-VEAALDDVQRRICRLVLEVLQVELQPLFSALPSRRWLLSSELLDGV
         ..: .  :. : ... :: . .. :  .:: . ..:.  .. : ...:::.:. .: .
mFLJ00 KTEAEEGLCLSQPSMDGILDAIAKEGCSSLLEEVFLDLEQHLNELMTKKWLLGSNAVDII
       540       550       560       570       580       590       

      90       100       110       120       130       140         
mFLJ00 CEQTSHFCQDFWRVRKPGVQLLLAEAERTVVLQYLRALMQGRLVCRGTDERSQAAERLRQ
       :  .  . .:: ...::  . . :::.: ::..::::.:: :.  :...::...::.. .
mFLJ00 CVTVEDYFNDFAKIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRSAEERKEGAEKMVR
       600       610       620       630       640       650       

     150           160       170       180       190       200     
mFLJ00 DAAQLKELF----LGLGLEESAHCAPVLLALRELLNLHDPTLLGLEVAGLRQQFPDVSED
       .: ::. ::     :.: . ..::  .. :. :...: ::.:: :::. : ...::. .:
mFLJ00 EAEQLRFLFRKLASGFGEDADGHCDTIV-AVAEVIKLTDPSLLYLEVSTLVSKYPDIRDD
       660       670       680        690       700       710      

         210       220       230       240       250       260     
mFLJ00 HVSALLDLRGDVSREHRQAALSSLQAGPPPSPSTGRRALFSLVPTPTPSLSSCLPSGPCS
       :..::: ::::.::. .:. . .:. ::  . : .   .:. . .:. .... :      
mFLJ00 HIGALLALRGDASRDMKQTIMETLEQGPMQA-SPNYVPIFKEIVVPSLNVAKLLK     
        720       730       740        750       760       770     




265 residues in 1 query   sequences
1768752 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:07:34 2006 done: Mon Mar 27 10:07:35 2006
 Scan time:  0.480 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]