FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0814.ptfa, 116 aa
 vs ./tmplib.26680 library

1768901 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9326+/-0.00378; mu= 7.2152+/- 0.254
 mean_var=78.6551+/-17.373, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1446

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4141  ( 1593 res)   mbg03129                  (1593)  354   83 3.9e-17
mKIAA0813  ( 1557 res)   mbg05377                  (1557)  296   71 1.7e-13


>>mKIAA4141  ( 1593 res)   mbg03129                       (1593 aa)
 initn: 344 init1: 218 opt: 354  Z-score: 400.0  bits: 83.1 E(): 3.9e-17
Smith-Waterman score: 354;  58.228% identity (58.974% ungapped) in 79 aa overlap (39-116:1514-1592)

       10        20        30        40        50        60        
mKIAA0 YLLGADQGTIYGPARPHYHQSPNITFLPSSENPCMGEIVREAIRRQKDYASCATASKVPI
                                     :  : :: .:.  ..:. ::.: :..::  
mKIAA4 KCKHGKCRLSGVGQPYCECNSGFTGDSCDREISCRGERIRDYYQKQQGYAACQTTKKVSR
          1490      1500      1510      1520      1530      1540   

       70         80        90       100       110       
mKIAA0 MECRGGC-GSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS 
       .:::::: :.::: :.::::::: :.::::::::.:::. ..:::  :. 
mKIAA4 LECRGGCAGGQCCGPLRSKRRKYSFECTDGSSFVDEVEKVVKCGCARCAS
          1550      1560      1570      1580      1590   

>>mKIAA0813  ( 1557 res)   mbg05377                       (1557 aa)
 initn: 277 init1: 186 opt: 296  Z-score: 334.7  bits: 71.0 E(): 1.7e-13
Smith-Waterman score: 296;  47.191% identity (48.276% ungapped) in 89 aa overlap (29-115:1468-1556)

                 10        20        30         40        50       
mKIAA0   VGAGSDHSYLLGADQGTIYGPARPHYHQSPNIT-FLPSSENPCMGEIVREAIRRQKDY
                                     ::...  :  .:. : :. ::.  : :. :
mKIAA0 VGAVAEPCGGLQCLHGHCQASATKGAHCVCSPGFSGELCEQESECRGDPVRDFHRVQRGY
      1440      1450      1460      1470      1480      1490       

        60        70         80        90       100       110      
mKIAA0 ASCATASKVPIMECRGGC-GSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS
       : : :.  .  .::::.: :. ::: .: :::: .:.:.::.::.::::.  .:::  : 
mKIAA0 AICQTTRPLSWVECRGACPGQGCCQGLRLKRRKLTFECSDGTSFAEEVEKPTKCGCAQCV
      1500      1510      1520      1530      1540      1550       




116 residues in 1 query   sequences
1768901 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:29:23 2006 done: Mon Mar 27 10:29:24 2006
 Scan time:  0.310 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]