# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpk00279.fasta.nr -Q ../query/mKIAA0814.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0814, 116 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920432 sequences Expectation_n fit: rho(ln(x))= 4.3512+/-0.000179; mu= 8.9062+/- 0.010 mean_var=59.6748+/-11.397, 0's: 42 Z-trim: 45 B-trim: 3 in 1/66 Lambda= 0.166027 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|4378027|gb|AAD19349.1| SLIT1 protein [Mus muscu ( 111) 570 144.0 4.7e-33 gi|148684332|gb|EDL16279.1| mCG12033 [Mus musculus (1385) 570 145.0 2.9e-32 gi|56206530|emb|CAI25608.1| slit homolog 3 (Drosop (1523) 570 145.0 3.1e-32 gi|74181116|dbj|BAE27826.1| unnamed protein produc (1523) 570 145.0 3.1e-32 gi|45477345|sp|Q9WVB4.1|SLIT3_MOUSE RecName: Full= (1523) 570 145.0 3.1e-32 gi|187956543|gb|AAI50781.1| Slit homolog 3 (Drosop (1523) 570 145.0 3.1e-32 gi|149052273|gb|EDM04090.1| slit homolog 3 (Drosop (1445) 552 140.7 5.9e-31 gi|45477220|sp|O88280.1|SLIT3_RAT RecName: Full=Sl (1523) 552 140.7 6.1e-31 gi|4377995|gb|AAD19336.1| SLIT1 protein [Homo sapi ( 850) 530 135.2 1.6e-29 gi|119581905|gb|EAW61501.1| slit homolog 3 (Drosop (1198) 530 135.3 2e-29 gi|119581904|gb|EAW61500.1| slit homolog 3 (Drosop (1320) 530 135.4 2.1e-29 gi|37182886|gb|AAQ89243.1| SLIT3 [Homo sapiens] (1523) 530 135.4 2.4e-29 gi|45477257|sp|O75094.2|SLIT3_HUMAN RecName: Full= (1523) 530 135.4 2.4e-29 gi|58801252|dbj|BAA32466.2| MEGF5 [Homo sapiens] (1559) 530 135.5 2.4e-29 gi|194219616|ref|XP_001917359.1| PREDICTED: simila (1504) 520 133.0 1.2e-28 gi|126291429|ref|XP_001380309.1| PREDICTED: simila (1524) 485 124.7 4.2e-26 gi|15281513|gb|AAK94292.1|AF364046_1 Slit3 protein ( 792) 424 109.8 6.5e-22 gi|224068202|ref|XP_002190033.1| PREDICTED: slit h (1520) 426 110.5 7.5e-22 gi|16118485|gb|AAL14445.1|AF387318_1 slit-3 [Gallu (1095) 424 109.9 8.2e-22 gi|118097251|ref|XP_414503.2| PREDICTED: similar t (1519) 424 110.1 1e-21 gi|116487453|gb|AAI25721.1| Hypothetical protein M (1519) 369 96.9 9.6e-18 gi|90079269|dbj|BAE89314.1| unnamed protein produc ( 246) 355 92.8 2.6e-17 gi|193786521|dbj|BAG51304.1| unnamed protein produ ( 413) 354 92.8 4.5e-17 gi|37747560|gb|AAH59267.1| Slit2 protein [Mus musc ( 945) 354 93.1 8.2e-17 gi|4151259|gb|AAD04345.1| neurogenic extracellular (1025) 354 93.1 8.7e-17 gi|109499794|ref|XP_346465.3| PREDICTED: similar t (1525) 355 93.5 9.8e-17 gi|119893700|ref|XP_001250359.1| PREDICTED: simila (1526) 355 93.5 9.8e-17 gi|194209268|ref|XP_001498244.2| PREDICTED: simila (1530) 355 93.5 9.9e-17 gi|119893698|ref|XP_613831.3| PREDICTED: similar t (1530) 355 93.5 9.9e-17 gi|114593319|ref|XP_001163236.1| PREDICTED: slit h (1444) 354 93.3 1.1e-16 gi|4151205|gb|AAD04309.1| neurogenic extracellular (1521) 354 93.3 1.2e-16 gi|114593315|ref|XP_001163334.1| PREDICTED: slit h (1521) 354 93.3 1.2e-16 gi|166064058|ref|NP_848919.3| slit homolog 2 precu (1521) 354 93.3 1.2e-16 gi|119613199|gb|EAW92793.1| slit homolog 2 (Drosop (1521) 354 93.3 1.2e-16 gi|45477343|sp|Q9R1B9.1|SLIT2_MOUSE RecName: Full= (1521) 354 93.3 1.2e-16 gi|114593311|ref|XP_001163294.1| PREDICTED: slit h (1525) 354 93.3 1.2e-16 gi|219520760|gb|AAI45489.1| Slit2 protein [Mus mus (1525) 354 93.3 1.2e-16 gi|4585572|gb|AAD25539.1|AF133270_1 SLIT2 [Homo sa (1525) 354 93.3 1.2e-16 gi|33112440|sp|O94813.1|SLIT2_HUMAN RecName: Full= (1529) 354 93.3 1.2e-16 gi|114593309|ref|XP_001163449.1| PREDICTED: slit h (1529) 354 93.3 1.2e-16 gi|114593313|ref|XP_001163410.1| PREDICTED: slit h (1531) 354 93.3 1.2e-16 gi|114593317|ref|XP_001163374.1| PREDICTED: slit h (1538) 354 93.3 1.2e-16 gi|187956493|gb|AAI50780.1| Slit2 protein [Mus mus (1542) 354 93.3 1.2e-16 gi|148705684|gb|EDL37631.1| slit homolog 2 (Drosop (1589) 354 93.3 1.2e-16 gi|149412303|ref|XP_001513256.1| PREDICTED: simila (1471) 351 92.6 1.9e-16 gi|15636793|gb|AAL02123.1| Slit [Xenopus laevis] (1530) 350 92.3 2.3e-16 gi|213623976|gb|AAI70476.1| Slit2-a protein [Xenop (1530) 350 92.3 2.3e-16 gi|15281511|gb|AAK94291.1|AF364045_1 Slit2 protein ( 950) 344 90.7 4.3e-16 gi|73951939|ref|XP_854843.1| PREDICTED: similar to (1530) 345 91.1 5.2e-16 gi|118090650|ref|XP_001232066.1| PREDICTED: simila (1519) 344 90.9 6.1e-16 >>gi|4378027|gb|AAD19349.1| SLIT1 protein [Mus musculus] (111 aa) initn: 570 init1: 570 opt: 570 Z-score: 749.8 bits: 144.0 E(): 4.7e-33 Smith-Waterman score: 570; 100.000% identity (100.000% similar) in 78 aa overlap (39-116:34-111) 10 20 30 40 50 60 mKIAA0 YLLGADQGTIYGPARPHYHQSPNITFLPSSENPCMGEIVREAIRRQKDYASCATASKVPI :::::::::::::::::::::::::::::: gi|437 KCHHGQCHISDRGEPYCLCQPGFSGHHCEQENPCMGEIVREAIRRQKDYASCATASKVPI 10 20 30 40 50 60 70 80 90 100 110 mKIAA0 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS :::::::::::::::::::::::::::::::::::::::::::::::: gi|437 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS 70 80 90 100 110 >>gi|148684332|gb|EDL16279.1| mCG12033 [Mus musculus] (1385 aa) initn: 570 init1: 570 opt: 570 Z-score: 735.6 bits: 145.0 E(): 2.9e-32 Smith-Waterman score: 570; 100.000% identity (100.000% similar) in 78 aa overlap (39-116:1308-1385) 10 20 30 40 50 60 mKIAA0 YLLGADQGTIYGPARPHYHQSPNITFLPSSENPCMGEIVREAIRRQKDYASCATASKVPI :::::::::::::::::::::::::::::: gi|148 KCHHGQCHISDRGEPYCLCQPGFSGHHCEQENPCMGEIVREAIRRQKDYASCATASKVPI 1280 1290 1300 1310 1320 1330 70 80 90 100 110 mKIAA0 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS :::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS 1340 1350 1360 1370 1380 >>gi|56206530|emb|CAI25608.1| slit homolog 3 (Drosophila (1523 aa) initn: 570 init1: 570 opt: 570 Z-score: 735.1 bits: 145.0 E(): 3.1e-32 Smith-Waterman score: 570; 100.000% identity (100.000% similar) in 78 aa overlap (39-116:1446-1523) 10 20 30 40 50 60 mKIAA0 YLLGADQGTIYGPARPHYHQSPNITFLPSSENPCMGEIVREAIRRQKDYASCATASKVPI :::::::::::::::::::::::::::::: gi|562 KCHHGQCHISDRGEPYCLCQPGFSGHHCEQENPCMGEIVREAIRRQKDYASCATASKVPI 1420 1430 1440 1450 1460 1470 70 80 90 100 110 mKIAA0 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS :::::::::::::::::::::::::::::::::::::::::::::::: gi|562 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS 1480 1490 1500 1510 1520 >>gi|74181116|dbj|BAE27826.1| unnamed protein product [M (1523 aa) initn: 570 init1: 570 opt: 570 Z-score: 735.1 bits: 145.0 E(): 3.1e-32 Smith-Waterman score: 570; 100.000% identity (100.000% similar) in 78 aa overlap (39-116:1446-1523) 10 20 30 40 50 60 mKIAA0 YLLGADQGTIYGPARPHYHQSPNITFLPSSENPCMGEIVREAIRRQKDYASCATASKVPI :::::::::::::::::::::::::::::: gi|741 KCHHGQCHISDRGEPYCLCQPGFSGHHCEQENPCMGEIVREAIRRQKDYASCATASKVPI 1420 1430 1440 1450 1460 1470 70 80 90 100 110 mKIAA0 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS :::::::::::::::::::::::::::::::::::::::::::::::: gi|741 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS 1480 1490 1500 1510 1520 >>gi|45477345|sp|Q9WVB4.1|SLIT3_MOUSE RecName: Full=Slit (1523 aa) initn: 570 init1: 570 opt: 570 Z-score: 735.1 bits: 145.0 E(): 3.1e-32 Smith-Waterman score: 570; 100.000% identity (100.000% similar) in 78 aa overlap (39-116:1446-1523) 10 20 30 40 50 60 mKIAA0 YLLGADQGTIYGPARPHYHQSPNITFLPSSENPCMGEIVREAIRRQKDYASCATASKVPI :::::::::::::::::::::::::::::: gi|454 KCHHGQCHISDRGEPYCLCQPGFSGHHCEQENPCMGEIVREAIRRQKDYASCATASKVPI 1420 1430 1440 1450 1460 1470 70 80 90 100 110 mKIAA0 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS :::::::::::::::::::::::::::::::::::::::::::::::: gi|454 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS 1480 1490 1500 1510 1520 >>gi|187956543|gb|AAI50781.1| Slit homolog 3 (Drosophila (1523 aa) initn: 570 init1: 570 opt: 570 Z-score: 735.1 bits: 145.0 E(): 3.1e-32 Smith-Waterman score: 570; 100.000% identity (100.000% similar) in 78 aa overlap (39-116:1446-1523) 10 20 30 40 50 60 mKIAA0 YLLGADQGTIYGPARPHYHQSPNITFLPSSENPCMGEIVREAIRRQKDYASCATASKVPI :::::::::::::::::::::::::::::: gi|187 KCHHGQCHISDRGEPYCLCQPGFSGHHCEQENPCMGEIVREAIRRQKDYASCATASKVPI 1420 1430 1440 1450 1460 1470 70 80 90 100 110 mKIAA0 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS :::::::::::::::::::::::::::::::::::::::::::::::: gi|187 MECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVEEVERHLECGCRACS 1480 1490 1500 1510 1520 >>gi|149052273|gb|EDM04090.1| slit homolog 3 (Drosophila (1445 aa) initn: 551 init1: 551 opt: 552 Z-score: 712.1 bits: 140.7 E(): 5.9e-31 Smith-Waterman score: 552; 77.885% identity (83.654% similar) in 104 aa overlap (13-116:1347-1445) 10 20 30 40 mKIAA0 VGAGSDHSYLLGADQGTIYGPARPHYHQSPNITFLPSSENPC .:.: : .: . : : .:::: gi|149 EGYEGPLCDQKNDSANACSAFKCHHGQCHISDRGEPYCLCQPGF--SGNHC---EQENPC 1320 1330 1340 1350 1360 1370 50 60 70 80 90 100 mKIAA0 MGEIVREAIRRQKDYASCATASKVPIMECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVE .:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|149 LGEIVREAIRRQKDYASCATASKVPIMVCRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVE 1380 1390 1400 1410 1420 1430 110 mKIAA0 EVERHLECGCRACS ::::::::::: :: gi|149 EVERHLECGCRECS 1440 >>gi|45477220|sp|O88280.1|SLIT3_RAT RecName: Full=Slit h (1523 aa) initn: 551 init1: 551 opt: 552 Z-score: 711.8 bits: 140.7 E(): 6.1e-31 Smith-Waterman score: 552; 77.885% identity (83.654% similar) in 104 aa overlap (13-116:1425-1523) 10 20 30 40 mKIAA0 VGAGSDHSYLLGADQGTIYGPARPHYHQSPNITFLPSSENPC .:.: : .: . : : .:::: gi|454 EGYEGPLCDQKNDSANACSAFKCHHGQCHISDRGEPYCLCQPGF--SGNHC---EQENPC 1400 1410 1420 1430 1440 50 60 70 80 90 100 mKIAA0 MGEIVREAIRRQKDYASCATASKVPIMECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVE .:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|454 LGEIVREAIRRQKDYASCATASKVPIMVCRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVE 1450 1460 1470 1480 1490 1500 110 mKIAA0 EVERHLECGCRACS ::::::::::: :: gi|454 EVERHLECGCRECS 1510 1520 >>gi|4377995|gb|AAD19336.1| SLIT1 protein [Homo sapiens] (850 aa) initn: 525 init1: 525 opt: 530 Z-score: 686.6 bits: 135.2 E(): 1.6e-29 Smith-Waterman score: 530; 72.115% identity (80.769% similar) in 104 aa overlap (13-116:752-850) 10 20 30 40 mKIAA0 VGAGSDHSYLLGADQGTIYGPARPHYHQSPNITFLPSSENPC .::: : .: . ..:::: gi|437 EGYGGDLCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHC-----QQENPC 730 740 750 760 770 50 60 70 80 90 100 mKIAA0 MGEIVREAIRRQKDYASCATASKVPIMECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVE .:..:::.::::: :::::::::::::::::::: ::::: ::::::::::::::::::: gi|437 LGQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQCTDGSSFVE 780 790 800 810 820 830 110 mKIAA0 EVERHLECGCRACS :::::::::: ::: gi|437 EVERHLECGCLACS 840 850 >>gi|119581905|gb|EAW61501.1| slit homolog 3 (Drosophila (1198 aa) initn: 525 init1: 525 opt: 530 Z-score: 684.6 bits: 135.3 E(): 2e-29 Smith-Waterman score: 530; 72.115% identity (80.769% similar) in 104 aa overlap (13-116:1100-1198) 10 20 30 40 mKIAA0 VGAGSDHSYLLGADQGTIYGPARPHYHQSPNITFLPSSENPC .::: : .: . ..:::: gi|119 EGYGGDLCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHC-----QQENPC 1070 1080 1090 1100 1110 1120 50 60 70 80 90 100 mKIAA0 MGEIVREAIRRQKDYASCATASKVPIMECRGGCGSQCCQPIRSKRRKYVFQCTDGSSFVE .:..:::.::::: :::::::::::::::::::: ::::: ::::::::::::::::::: gi|119 LGQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQCTDGSSFVE 1130 1140 1150 1160 1170 1180 110 mKIAA0 EVERHLECGCRACS :::::::::: ::: gi|119 EVERHLECGCLACS 1190 116 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 13:52:36 2009 done: Mon Mar 16 13:56:19 2009 Total Scan time: 528.050 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]