FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1164.ptfa, 623 aa
 vs ./tmplib.26680 library

1768394 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.3953+/-0.00724; mu= -4.4341+/- 0.481
 mean_var=279.1446+/-67.314, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0768

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1390  ( 378 res)   mpj01642                   ( 378) 1401  168 1.2e-42


>>mKIAA1390  ( 378 res)   mpj01642                        (378 aa)
 initn: 1275 init1: 1275 opt: 1401  Z-score: 857.8  bits: 168.2 E(): 1.2e-42
Smith-Waterman score: 1401;  58.421% identity (62.890% ungapped) in 380 aa overlap (227-597:1-362)

        200       210       220       230       240       250      
mKIAA1 PSSSEFNSEEGAETRVPEDVEEGAAGPPRAAPLCKEEEEDPAQVLAASKERFPGQSVYHI
                                     : .:.. .: :     . . . :  . : .
mKIAA1                               AEVCSRPQELPQ----SPRIQQPELDFYCV
                                             10            20      

        260       270       280       290       300       310      
mKIAA1 KWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKFPPMMEIITAEQLMEYLGDYMLE
       ::: :: : ::::::. :::::::::.:.:.: ::::.::. :.::...:. .::. .: 
mKIAA1 KWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLS
         30        40        50        60        70        80      

        320       330       340       350       360       370      
mKIAA1 AKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPL
        ::.: ::  ..:..::..:::..: :: ::::::::::::  ::::::: .:::: :::
mKIAA1 IKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPL
         90       100       110       120       130       140      

        380       390       400       410       420       430      
mKIAA1 YHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSQLVSEGFVAEQFLNNTATQLTY
       :::::::::  . :.:::. ::::::::::.::.:..:.::.::.::::::..::.::::
mKIAA1 YHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTY
        150       160       170       180       190       200      

        440       450       460       470       480       490      
mKIAA1 HGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKIVWESLHNVDGD
       :::::::... : :: :::::::::::::.:..::::::::::: ::..:::::::::::
mKIAA1 HGLCELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGD
        210       220       230       240       250       260      

        500       510             520       530       540       550
mKIAA1 GNFCDSEFHLRPPSDPETVYKG------QQDQIDQDYLMALSLQQEQQSQEINWEQIPEG
       . ::::.:::          .:      .: :.:::::.::::::.:: :         :
mKIAA1 SCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQDYLIALSLQQQQQPQGT------LG
        270       280       290       300       310             320

              560       570       580       590          600       
mKIAA1 ISDLELAKKLQEEEDRRASQYYQEQEQAQAVVTTTTPSTQ---AQQGQPAQASPSSIKQP
       .::::::..::.::       ::.:. .: :  : .:: :   : .:.::          
mKIAA1 LSDLELAQQLQQEE-------YQQQQAVQPV-RTRAPSPQGRGATSGRPAGERRQRSKTE
              330              340        350       360       370  

       610       620   
mKIAA1 GNSERKRKEPREKDKE
                       
mKIAA1 SDCVLL          
                       




623 residues in 1 query   sequences
1768394 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:37:33 2006 done: Mon Mar 27 10:37:34 2006
 Scan time:  0.820 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]