FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4006.ptfa, 502 aa
 vs ./tmplib.26680 library

1768515 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.4581+/-0.00765; mu= -2.1483+/- 0.508
 mean_var=372.7718+/-87.613, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.0664

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0044  ( 458 res)   mbj00150                   ( 458) 1920  197   2e-51


>>mKIAA0044  ( 458 res)   mbj00150                        (458 aa)
 initn: 1868 init1: 1529 opt: 1920  Z-score: 1015.5  bits: 197.3 E(): 2e-51
Smith-Waterman score: 1920;  63.578% identity (65.121% ungapped) in 464 aa overlap (7-466:1-457)

               10        20        30        40        50        60
mKIAA4 KHCRYRGTGGTSPRTAVVARGSPPLPGPPPVRPGPSPAPAAAPSSQPTPRSHRSSSDSSP
             :.::   : .   : .: .:.    .  : : :.   .:   :.  ......  
mKIAA0       GSGGGR-RQGRRRRPAPAMPNKNKKEKEP-PKPV---KSGKGPKEGQDTAETEI
                      10        20         30           40         

               70        80        90       100       110       120
mKIAA4 GASSRDMSSAPTTPPSVDKVDGFSRKSVRKARQKRSQSSSQFRSQGKPIELTPLPLLKDV
       .. . ... . ..  .  ::  . .  :  ... . :.::.: ....  ::  :: ::::
mKIAA0 ASRKNSLTVVQSSTSTKIKVP-IPQPVVVPVKKDKRQNSSRFNASNNR-ELQKLPSLKDV
      50        60        70         80        90        100       

              130       140        150       160       170         
mKIAA4 PTSEQPELFLKKLQQCCVIFDFM-DTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYP
       : ..: .::..::.::::.:::. : ::::: :: ::..:.:.:.::: .:. .::  ::
mKIAA0 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP
       110       120       130       140       150       160       

     180       190          200       210       220       230      
mKIAA4 EVVRMVSCNIFRTLPPSDS---NEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPS
       :.:.: . :.:::::::..    :::::::::::::.:::::::::::.::::: .:::.
mKIAA0 EAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPN
       170       180       190       200       210       220       

        240       250       260       270       280       290      
mKIAA4 IAKKYIDQKFVLQLLELFDSEDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVY
       :::::::::::::::::::::::::::.:::.:::::::::::::.::::::::: ::.:
mKIAA0 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY
       230       240       250       260       270       280       

        300       310       320       330       340       350      
mKIAA4 ETEHFNGVAELLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQ
       :::: ::.::::::::::::::::::: ::: ::.:::.::: :.:::..: :::::.::
mKIAA0 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQ
       290       300       310       320       330       340       

        360       370       380       390       400       410      
mKIAA4 FLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAK
       ::::: .:::::. .:.:.:::: : ::::::.::::::::::::.::::.::::.:.::
mKIAA0 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAK
       350       360       370       380       390       400       

        420       430       440       450       460       470      
mKIAA4 CVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNV
       :::::::::::::::::::::::::: .:.  :::::: :::: :: :::          
mKIAA0 CVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNK         
       410       420       430       440       450                 

        480       490       500  
mKIAA4 LKAFMEMNSTMFDELTATYKSDRQRE




502 residues in 1 query   sequences
1768515 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:05 2006 done: Mon Mar 27 10:59:06 2006
 Scan time:  0.710 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]