FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4079.ptfa, 366 aa
 vs ./tmplib.26680 library

1768651 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.0895+/-0.00555; mu= -3.1665+/- 0.369
 mean_var=171.3476+/-40.102, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0980

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0468  ( 486 res)   mpm07213                   ( 486)  379   65   9e-12


>>mKIAA0468  ( 486 res)   mpm07213                        (486 aa)
 initn: 300 init1: 231 opt: 379  Z-score: 303.7  bits: 65.2 E(): 9e-12
Smith-Waterman score: 379;  36.398% identity (40.773% ungapped) in 261 aa overlap (117-366:243-486)

         90       100       110       120       130       140      
mKIAA4 EDQDGSGDDSDNFSGSGTGALPDTLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFTSV
                                     .:  ::         : : .. . . .:. 
mKIAA0 ATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQGMLPLPLTTAATAKITT-
            220       230       240       250       260       270  

        150       160       170       180       190       200      
mKIAA4 LPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAAVT
        ::. .:     .: .:: :  : :   . .:.::: ..  :.: .   :      :  .
mKIAA0 -PAAPSPPTTVATLDTEA-P--TPR-LVNTATSRPR-ALPRPVTTQEPDV------AERS
              280          290        300        310               

        210          220       230        240           250        
mKIAA4 SHPHGGMQPG---LHETSAPTAPGQPDHQPPRVE-GGGTS----VIKEVVEDGTANQLPA
       . : :   ::   . .: .: .     .. :.:  .:: :    . .:...  :::.. :
mKIAA0 TLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFELQEETTQPDTANEVVA
     320       330       340       350       360       370         

      260       270       280       290          300       310     
mKIAA4 GEGSGEQDFTFETSGENTAVAAVEPGLRNQPPVDEGATGAS---QSLLDRKEVLGGVIAG
        ::.. .       :     :   :::...  .: :...:.   .:.:.::::: .::.:
mKIAA0 VEGAAAKPSP--PLGTLPKGARPGPGLHDNA-IDSGSSAAQLPQKSILERKEVLVAVIVG
     380         390       400        410       420       430      

         320       330       340       350       360      
mKIAA4 GLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
       :.:: .::. ::....:::::::::::.:::::::.  .:::: :::::::
mKIAA0 GVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
        440       450       460       470        480      




366 residues in 1 query   sequences
1768651 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:01:14 2006 done: Mon Mar 27 11:01:14 2006
 Scan time:  0.600 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]