# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpj03390.fasta.nr -Q ../query/mKIAA4079.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4079, 366 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919008 sequences Expectation_n fit: rho(ln(x))= 5.8179+/-0.00019; mu= 8.0866+/- 0.011 mean_var=92.6334+/-17.678, 0's: 34 Z-trim: 38 B-trim: 10 in 1/64 Lambda= 0.133257 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|135156|sp|P18828.1|SDC1_MOUSE RecName: Full=Syn ( 311) 2069 407.4 2e-111 gi|74207636|dbj|BAE40064.1| unnamed protein produc ( 311) 2052 404.2 2e-110 gi|464744|sp|P26260.2|SDC1_RAT RecName: Full=Synde ( 313) 1873 369.7 4.5e-100 gi|464743|sp|P34740.1|SDC1_MESAU RecName: Full=Syn ( 309) 1739 344.0 2.5e-92 gi|1351048|sp|P47951.1|SDC1_CRIGR RecName: Full=Sy ( 309) 1737 343.6 3.3e-92 gi|57324|emb|CAA43058.1| syndecan [Rattus norvegic ( 279) 1645 325.9 6.5e-87 gi|135155|sp|P18827.2|SDC1_HUMAN RecName: Full=Syn ( 310) 1551 307.8 1.9e-81 gi|62702225|gb|AAX93151.1| unknown [Homo sapiens] ( 310) 1547 307.1 3.3e-81 gi|14250612|gb|AAH08765.1| Syndecan 1 [Homo sapien ( 310) 1539 305.5 9.6e-81 gi|109102131|ref|XP_001095194.1| PREDICTED: syndec ( 310) 1539 305.5 9.6e-81 gi|30583913|gb|AAP36205.1| Homo sapiens syndecan 1 ( 311) 1539 305.5 9.6e-81 gi|73980589|ref|XP_540099.2| PREDICTED: similar to ( 446) 1541 306.0 9.7e-81 gi|338634|gb|AAA60605.1| syndecan ( 310) 1537 305.1 1.3e-80 gi|5354039|gb|AAD42345.1|AF134897_1 syndecan-1 [Mu ( 267) 1448 288.0 1.6e-75 gi|148665996|gb|EDK98412.1| syndecan 1, isoform CR ( 258) 1436 285.7 7.6e-75 gi|666052|emb|CAA88235.1| syndecan-1 [Homo sapiens ( 288) 1401 279.0 8.8e-73 gi|122132416|sp|Q08DZ5.1|SDC1_BOVIN RecName: Full= ( 311) 1366 272.3 9.9e-71 gi|194220934|ref|XP_001501792.2| PREDICTED: simila ( 452) 1255 251.0 3.5e-64 gi|194387916|dbj|BAG61371.1| unnamed protein produ ( 292) 1065 214.4 2.5e-53 gi|114576379|ref|XP_001140545.1| PREDICTED: simila ( 241) 918 186.1 6.8e-45 gi|62897037|dbj|BAD96459.1| syndecan 1 precursor v ( 161) 754 154.4 1.6e-35 gi|148665995|gb|EDK98411.1| syndecan 1, isoform CR ( 158) 739 151.5 1.1e-34 gi|149580560|ref|XP_001517354.1| PREDICTED: simila ( 296) 707 145.6 1.3e-32 gi|118089042|ref|XP_419972.2| PREDICTED: hypotheti ( 308) 621 129.0 1.3e-27 gi|15983068|gb|AAL11541.1| syndecan-1 [Meleagris g ( 87) 579 120.6 1.3e-25 gi|149050908|gb|EDM03081.1| syndecan 1, isoform CR ( 116) 507 106.8 2.4e-21 gi|149271685|ref|XP_001474686.1| PREDICTED: simila ( 241) 480 101.9 1.5e-19 gi|126345131|ref|XP_001364964.1| PREDICTED: simila ( 251) 435 93.2 6.3e-17 gi|149271676|ref|XP_001474519.1| PREDICTED: simila ( 174) 400 86.4 5.1e-15 gi|1399585|gb|AAB03284.1| syndecan-3 ( 442) 380 82.8 1.5e-13 gi|114152874|sp|Q64519.2|SDC3_MOUSE RecName: Full= ( 442) 379 82.6 1.7e-13 gi|1399583|gb|AAB03283.1| syndecan-3 ( 442) 377 82.2 2.2e-13 gi|1334236|emb|CAA44848.1| neuroglycan [Rattus rat ( 353) 372 81.2 3.7e-13 gi|149024102|gb|EDL80599.1| syndecan 3 [Rattus nor ( 442) 372 81.3 4.3e-13 gi|2507439|sp|P33671.3|SDC3_RAT RecName: Full=Synd ( 442) 372 81.3 4.3e-13 gi|2547264|gb|AAB81324.1| syndecan-1 [Xenopus laev ( 604) 369 80.8 8.3e-13 gi|74211964|dbj|BAE29322.1| unnamed protein produc ( 186) 350 76.8 4.2e-12 gi|56206270|emb|CAI22245.1| syndecan 3 [Homo sapie ( 384) 353 77.6 4.9e-12 gi|119628042|gb|EAX07637.1| syndecan 3 (N-syndecan ( 346) 352 77.4 5.2e-12 gi|123981994|gb|ABM82826.1| syndecan 3 (N-syndecan ( 370) 352 77.4 5.4e-12 gi|13810649|gb|AAK39969.1|AF248634_1 syndecan 3 [H ( 442) 353 77.6 5.5e-12 gi|114152873|sp|O75056.2|SDC3_HUMAN RecName: Full= ( 442) 352 77.4 6.2e-12 gi|119888633|ref|XP_875616.2| PREDICTED: similar t ( 442) 351 77.2 7.1e-12 gi|114555293|ref|XP_001149044.1| PREDICTED: simila ( 403) 349 76.8 8.7e-12 gi|73950489|ref|XP_544449.2| PREDICTED: similar to ( 591) 351 77.3 8.9e-12 gi|109000859|ref|XP_001092729.1| PREDICTED: simila ( 498) 350 77.1 8.9e-12 gi|194207786|ref|XP_001500236.2| PREDICTED: simila ( 403) 347 76.4 1.1e-11 gi|194380786|dbj|BAG58546.1| unnamed protein produ ( 346) 346 76.2 1.1e-11 gi|57116395|gb|AAW33686.1| syndecan-3 [Meleagris g ( 403) 342 75.5 2.2e-11 gi|1351050|sp|P26261.2|SDC3_CHICK RecName: Full=Sy ( 405) 337 74.5 4.3e-11 >>gi|135156|sp|P18828.1|SDC1_MOUSE RecName: Full=Syndeca (311 aa) initn: 2069 init1: 2069 opt: 2069 Z-score: 2156.6 bits: 407.4 E(): 2e-111 Smith-Waterman score: 2069; 100.000% identity (100.000% similar) in 311 aa overlap (56-366:1-311) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP :::::::::::::::::::::::::::::: gi|135 MRRAALWLWLCALALRLQPALPQIVAVNVP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPDTLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 PEDQDGSGDDSDNFSGSGTGALPDTLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFTS 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 VLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 VLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAAV 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 TSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 TSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGEQ 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA4 DFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 DFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAVC 220 230 240 250 260 270 330 340 350 360 mKIAA4 LVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA ::::::::::::::::::::::::::::::::::::::::: gi|135 LVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 280 290 300 310 >>gi|74207636|dbj|BAE40064.1| unnamed protein product [M (311 aa) initn: 2052 init1: 2052 opt: 2052 Z-score: 2138.9 bits: 404.2 E(): 2e-110 Smith-Waterman score: 2052; 99.357% identity (99.678% similar) in 311 aa overlap (56-366:1-311) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP :::::::::::::::::::::::::::::: gi|742 MRRAALWLWLCALALRLQPALPQIVAVNVP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPDTLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 PEDQDGSGDDSDNFSGSGTGALPDTLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFTS 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 VLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAAV :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|742 VLPAGEKPEEGEPVLHVEAEPGFTAQDKEKEVTTRPRETVQLPITQRASTVRVTTAQAAV 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 TSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGEQ 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA4 DFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAVC :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|742 DFTFETSGENTAVAAVEPGLRNQPAVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAVC 220 230 240 250 260 270 330 340 350 360 mKIAA4 LVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA ::::::::::::::::::::::::::::::::::::::::: gi|742 LVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 280 290 300 310 >>gi|464744|sp|P26260.2|SDC1_RAT RecName: Full=Syndecan- (313 aa) initn: 1394 init1: 1040 opt: 1873 Z-score: 1952.9 bits: 369.7 E(): 4.5e-100 Smith-Waterman score: 1873; 90.415% identity (96.166% similar) in 313 aa overlap (56-366:1-313) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP :::::::::::::::::::::::::..::: gi|464 MRRAALWLWLCALALRLQPALPQIVTANVP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFT :::::::::::::::::::::::: ::::::::::::::::::::::::::: .::...: gi|464 PEDQDGSGDDSDNFSGSGTGALPDMTLSRQTPSTWKDVWLLTATPTAPEPTSRDTEATLT 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 SVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTV-RVTTAQA :.::::::::::::: :::::: :::::::::.:::::::.:::.::.:::. :.::::: gi|464 SILPAGEKPEEGEPVAHVEAEPDFTARDKEKEATTRPRETTQLPVTQQASTAARATTAQA 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 AVTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSG .::::::: .::::::: ::::::::::::: :: :::::::::::: :.:::::::::: gi|464 SVTSHPHGDVQPGLHETLAPTAPGQPDHQPPSVEDGGTSVIKEVVEDETTNQLPAGEGSG 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA4 EQDFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFA ::::::::::::::::.::: :::: :::::::::::.:::::::::::::::::::::: gi|464 EQDFTFETSGENTAVAGVEPDLRNQSPVDEGATGASQGLLDRKEVLGGVIAGGLVGLIFA 220 230 240 250 260 270 330 340 350 360 mKIAA4 VCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA ::::::::::::::::::::::::::::::::::::::::::: gi|464 VCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 280 290 300 310 >>gi|464743|sp|P34740.1|SDC1_MESAU RecName: Full=Syndeca (309 aa) initn: 1154 init1: 800 opt: 1739 Z-score: 1813.8 bits: 344.0 E(): 2.5e-92 Smith-Waterman score: 1739; 85.256% identity (94.231% similar) in 312 aa overlap (56-366:1-309) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP :::::::::::::::::::.:::::.:::: gi|464 MRRAALWLWLCALALRLQPVLPQIVTVNVP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFT :::::::::::::::::::::::: :::::. : ::::::::::::::::: ..... : gi|464 PEDQDGSGDDSDNFSGSGTGALPDITLSRQASPTLKDVWLLTATPTAPEPTSRDAQATTT 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 SVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAA :.:::.::: :::::: .:..:::::::::.:::::::::.:: ::. .::.:.::::: gi|464 SILPAAEKPGEGEPVLTAEVDPGFTARDKESEVTTRPRETTQLLITHWVSTARATTAQAP 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 VTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGE :::::: .:::::::::::::::::.::: .:::::::::.:::..::::.:::::: gi|464 VTSHPHRDVQPGLHETSAPTAPGQPDQQPP---SGGTSVIKEVAEDGATNQLPTGEGSGE 160 170 180 190 200 270 280 290 300 310 320 mKIAA4 QDFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAV ::::::::::::::::::: :::::::::::::::.::::::::::::::::::::::: gi|464 QDFTFETSGENTAVAAVEPDQRNQPPVDEGATGASQGLLDRKEVLGGVIAGGLVGLIFAV 210 220 230 240 250 260 330 340 350 360 mKIAA4 CLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA :::.:::::::::::::::::::::::::::::::::::::: gi|464 CLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 270 280 290 300 >>gi|1351048|sp|P47951.1|SDC1_CRIGR RecName: Full=Syndec (309 aa) initn: 1151 init1: 796 opt: 1737 Z-score: 1811.7 bits: 343.6 E(): 3.3e-92 Smith-Waterman score: 1737; 85.256% identity (93.590% similar) in 312 aa overlap (56-366:1-309) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP :::::::::::::::::::.::::.::::: gi|135 MRRAALWLWLCALALRLQPVLPQIMAVNVP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFT :::::::::::::::::::::::: :::::: :: ::::::::::::::::: .::..:: gi|135 PEDQDGSGDDSDNFSGSGTGALPDITLSRQTSSTLKDVWLLTATPTAPEPTSRDTEATFT 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 SVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAA :.::::::: :::::: .:.. . :. ::: :::::::::.:: .:.:.::.:.::::: gi|135 SILPAGEKPGEGEPVLIAEVDTSSTTWDKELEVTTRPRETTQLLVTHRVSTARATTAQAP 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA4 VTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGE :::::: .::::::: ::::::::::::: .:::::::::.:::..::::.:::::: gi|135 VTSHPHRDVQPGLHETLAPTAPGQPDHQPP---SGGTSVIKEVAEDGATNQLPTGEGSGE 160 170 180 190 200 270 280 290 300 310 320 mKIAA4 QDFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAV ::::::::::::::::.:: :::::::::::::::.::::::::::::::::::::::: gi|135 QDFTFETSGENTAVAAIEPDQRNQPPVDEGATGASQGLLDRKEVLGGVIAGGLVGLIFAV 210 220 230 240 250 260 330 340 350 360 mKIAA4 CLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA :::.:::::::::::::::::::::::::::::::::::::: gi|135 CLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 270 280 290 300 >>gi|57324|emb|CAA43058.1| syndecan [Rattus norvegicus] (279 aa) initn: 1166 init1: 1040 opt: 1645 Z-score: 1716.7 bits: 325.9 E(): 6.5e-87 Smith-Waterman score: 1645; 89.964% identity (95.699% similar) in 279 aa overlap (90-366:1-279) 60 70 80 90 100 110 mKIAA4 ALWLWLCALALRLQPALPQIVAVNVPPEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPST :::::::::::::::::::: ::::::::: gi|573 DGSGDDSDNFSGSGTGALPDMTLSRQTPST 10 20 30 120 130 140 150 160 170 mKIAA4 WKDVWLLTATPTAPEPTSSNTETAFTSVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVT :::::::::::::::::: .::...::.::::::::::::: :::::: :::::::::.: gi|573 WKDVWLLTATPTAPEPTSRDTEATLTSILPAGEKPEEGEPVAHVEAEPDFTARDKEKEAT 40 50 60 70 80 90 180 190 200 210 220 230 mKIAA4 TRPRETVQLPITQRASTV-RVTTAQAAVTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVE ::::::.:::.::.:::. :.:::::.::::::: .::::::: ::::::::::::: :: gi|573 TRPRETTQLPVTQQASTAARATTAQASVTSHPHGDVQPGLHETLAPTAPGQPDHQPPSVE 100 110 120 130 140 150 240 250 260 270 280 290 mKIAA4 GGGTSVIKEVVEDGTANQLPAGEGSGEQDFTFETSGENTAVAAVEPGLRNQPPVDEGATG :::::::::::: :.::::::::::::::::::::::::::.::: :::: :::::::: gi|573 DGGTSVIKEVVEDETTNQLPAGEGSGEQDFTFETSGENTAVAGVEPDLRNQSPVDEGATG 160 170 180 190 200 210 300 310 320 330 340 350 mKIAA4 ASQSLLDRKEVLGGVIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQK :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|573 ASQGLLDRKEVLGGVIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQK 220 230 240 250 260 270 360 mKIAA4 PTKQEEFYA ::::::::: gi|573 PTKQEEFYA >>gi|135155|sp|P18827.2|SDC1_HUMAN RecName: Full=Syndeca (310 aa) initn: 1307 init1: 975 opt: 1551 Z-score: 1618.4 bits: 307.8 E(): 1.9e-81 Smith-Waterman score: 1551; 76.282% identity (90.064% similar) in 312 aa overlap (56-366:1-310) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP ::::::::::::::: ::::::::::.:.: gi|135 MRRAALWLWLCALALSLQPALPQIVATNLP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFT ::::::::::::::::::.::: : :::.::::::::. :::: ::.::::. .. .: : gi|135 PEDQDGSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAAST 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 SVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAA :.::::: :.::: :. :.:::.::: :.:.: :::::.::: :..:::. .:::: gi|135 STLPAGEGPKEGEAVVLPEVEPGLTAR--EQEATPRPRETTQLPTTHQASTTTATTAQEP 100 110 120 130 140 210 220 230 240 250 260 mKIAA4 VTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGE .::::: :::: ::::.:..:.: : . :..: :: :. ....:::...::::.::::: gi|135 ATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGE 150 160 170 180 190 200 270 280 290 300 310 320 mKIAA4 QDFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAV ::::::::::::::.:::: ::: :::.:::::::.::::::::::::::::::::::: gi|135 QDFTFETSGENTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLGGVIAGGLVGLIFAV 210 220 230 240 250 260 330 340 350 360 mKIAA4 CLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA :::.:::::::::::::::::::::::::::::::::::::: gi|135 CLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 270 280 290 300 310 >>gi|62702225|gb|AAX93151.1| unknown [Homo sapiens] (310 aa) initn: 1303 init1: 971 opt: 1547 Z-score: 1614.3 bits: 307.1 E(): 3.3e-81 Smith-Waterman score: 1547; 76.282% identity (89.744% similar) in 312 aa overlap (56-366:1-310) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP ::::::::::::::: ::::::::::.:.: gi|627 MRRAALWLWLCALALSLQPALPQIVATNLP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFT ::::::::::::::::::.::: : :::.::::::::. :::: ::.::::. .. .: : gi|627 PEDQDGSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAAST 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 SVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAA :.::::: :.::: :. :.:::.::: :.:.: :::::.::: :. :::. .:::: gi|627 STLPAGEGPKEGEAVVLPEVEPGLTAR--EQEATPRPRETTQLPTTHLASTTTATTAQEP 100 110 120 130 140 210 220 230 240 250 260 mKIAA4 VTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGE .::::: :::: ::::.:..:.: : . :..: :: :. ....:::...::::.::::: gi|627 ATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGE 150 160 170 180 190 200 270 280 290 300 310 320 mKIAA4 QDFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAV ::::::::::::::.:::: ::: :::.:::::::.::::::::::::::::::::::: gi|627 QDFTFETSGENTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLGGVIAGGLVGLIFAV 210 220 230 240 250 260 330 340 350 360 mKIAA4 CLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA :::.:::::::::::::::::::::::::::::::::::::: gi|627 CLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 270 280 290 300 310 >>gi|14250612|gb|AAH08765.1| Syndecan 1 [Homo sapiens] (310 aa) initn: 1295 init1: 963 opt: 1539 Z-score: 1605.9 bits: 305.5 E(): 9.6e-81 Smith-Waterman score: 1539; 75.962% identity (89.744% similar) in 312 aa overlap (56-366:1-310) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP ::::::::::::::: ::::::::::.:.: gi|142 MRRAALWLWLCALALSLQPALPQIVATNLP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFT ::::::::::::::::::.::: : :::.::::::::. :::: ::.::::. .. .: : gi|142 PEDQDGSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAAST 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 SVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAA :.::::: :.::: :. :.:::.::: :.:.: :::::.::: :..:::. .:::: gi|142 STLPAGEGPKEGEAVVLPEVEPGLTAR--EQEATPRPRETTQLPTTHQASTTTATTAQEP 100 110 120 130 140 210 220 230 240 250 260 mKIAA4 VTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGE .::::: :::: ::::.:..:.: : . :..: :: :. ....:::...::::.::::: gi|142 ATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGE 150 160 170 180 190 200 270 280 290 300 310 320 mKIAA4 QDFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAV ::::::::::::::.:::: ::: :::.:::::::.::::::::::::: ::::::::: gi|142 QDFTFETSGENTAVVAVEPDRRNQSPVDQGATGASQGLLDRKEVLGGVIAVGLVGLIFAV 210 220 230 240 250 260 330 340 350 360 mKIAA4 CLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA :::.:::::::::::::::::::::::::::::::::::::: gi|142 CLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 270 280 290 300 310 >>gi|109102131|ref|XP_001095194.1| PREDICTED: syndecan 1 (310 aa) initn: 1308 init1: 978 opt: 1539 Z-score: 1605.9 bits: 305.5 E(): 9.6e-81 Smith-Waterman score: 1539; 74.359% identity (89.103% similar) in 312 aa overlap (56-366:1-310) 30 40 50 60 70 80 mKIAA4 EQSAEPARSSVQPATRIHEAHRAPAAGLGSMRRAALWLWLCALALRLQPALPQIVAVNVP ::::::::::::::: ::::.:::::.:.: gi|109 MRRAALWLWLCALALSLQPAMPQIVATNLP 10 20 30 90 100 110 120 130 140 mKIAA4 PEDQDGSGDDSDNFSGSGTGALPD-TLSRQTPSTWKDVWLLTATPTAPEPTSSNTETAFT ::::::::::::::::::.::: : :::.::::::::.::. ::: .::::. .. .: : gi|109 PEDQDGSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTWLVRATPMSPEPTGLEATAAST 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA4 SVLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTVRVTTAQAA :.. ::: :.::: :. .:.:: .::: :.:.: .: ::.::: :..: :.:.:::: gi|109 STIQAGEGPKEGEAVVLLEVEPDLTAR--EQEATPQPTETTQLPTTHQAPTARATTAQEP 100 110 120 130 140 210 220 230 240 250 260 mKIAA4 VTSHPHGGMQPGLHETSAPTAPGQPDHQPPRVEGGGTSVIKEVVEDGTANQLPAGEGSGE .::::: :::: ::::::..::: : . ::.: :: :. ....:::...::::.::::: gi|109 ATSHPHRDMQPGHHETSAPAGPGQADLHTPRTEDGGPSATERAAEDGASSQLPAAEGSGE 150 160 170 180 190 200 270 280 290 300 310 320 mKIAA4 QDFTFETSGENTAVAAVEPGLRNQPPVDEGATGASQSLLDRKEVLGGVIAGGLVGLIFAV :::::::::::::..:::: ::: ::: :::::::.::::::::::.:::::::::::: gi|109 QDFTFETSGENTAIVAVEPDHRNQSPVDPGATGASQGLLDRKEVLGGIIAGGLVGLIFAV 210 220 230 240 250 260 330 340 350 360 mKIAA4 CLVAFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA :::.:::::::::::::::::::::::::::::::::::::: gi|109 CLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 270 280 290 300 310 366 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 10:12:56 2009 done: Tue Mar 17 10:19:14 2009 Total Scan time: 861.860 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]