FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1595.ptfa, 615 aa vs ./tmplib.26680 library 1768402 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.5298+/-0.00516; mu= 18.2745+/- 0.344 mean_var=128.4958+/-30.733, 0's: 0 Z-trim: 3 B-trim: 30 in 2/34 Lambda= 0.1131 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0111 ( 410 res) mpk01295 ( 410) 360 70 4.3e-13 mKIAA0801 ( 1078 res) mpm05148 (1078) 293 60 1.4e-09 >>mKIAA0111 ( 410 res) mpk01295 (410 aa) initn: 565 init1: 210 opt: 360 Z-score: 327.4 bits: 70.1 E(): 4.3e-13 Smith-Waterman score: 583; 30.168% identity (32.143% ungapped) in 358 aa overlap (31-387:44-380) 10 20 30 40 50 60 mKIAA1 QRCGRLKPAENRGRAMEHVTEGAWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMK :. .: .. :: . . .:. .: ..: mKIAA0 KRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK 20 30 40 50 60 70 70 80 90 100 110 120 mKIAA1 NKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHF ..:: :.. .:.::: .: . .:. : . .....: :....::::::.::.. : . mKIAA0 GRDVIAQSQSGTGKTATFSVSVLQCL---DIQVRETQ--ALILAPTRELAVQIQKGLLAL 80 90 100 110 120 130 140 150 160 170 180 mKIAA1 TKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSL .. . ::: : :::.... ..: .....::::. ::.::.. : . ... mKIAA0 GDYMNVQCHAC-IGGTNVGEDIRKL-DYGQHVVAGTPGRVFDMIRRRS----LRT--RAI 130 140 150 160 170 180 190 200 210 220 230 240 mKIAA1 DVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISV .:::::::..:. ::. .: . ..:: .. :.::: .:. ... . .:.:: : mKIAA0 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 190 200 210 220 230 240 250 260 270 280 290 300 mKIAA1 KEKGVAASSTQKTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGK :. .. . .. .: . . ::. : . . . ..: .: :.. . mKIAA0 KRDELTLEGIKQFFVAVE------REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 250 260 270 280 290 310 320 330 340 350 mKIAA1 ALEALLKKVKILCIHGKMKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYD .. . . .:: : : :..:. :::. : .:. ::: :::.:.:.:. ...:: mKIAA0 KMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 300 310 320 330 340 350 360 370 380 390 400 410 mKIAA1 PPSNASAFVHRCGRTARIGHGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTIDLL :.: ..:: ::..: :. : :. :. mKIAA0 LPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 360 370 380 390 400 410 >>mKIAA0801 ( 1078 res) mpm05148 (1078 aa) initn: 435 init1: 217 opt: 293 Z-score: 264.5 bits: 59.9 E(): 1.4e-09 Smith-Waterman score: 532; 30.319% identity (32.665% ungapped) in 376 aa overlap (23-394:424-776) 10 20 30 40 50 mKIAA1 QRCGRLKPAENRGRAMEHVTEGAWESLQVPLHPRVLGALRELGFPHMTPVQS .: .: . ..:..:.. :. . ::.:. mKIAA0 AKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW--VQCGISMKILNSLKKHGYEKPTPIQT 400 410 420 430 440 450 60 70 80 90 100 110 mKIAA1 ATIPLFMKNKDVAAEAVTGSGKTLAFVIPILE-ILLRREEKLKKNQVGAIVITPTRELAI .:: .:...:. . : ::::::.::..:... :. .: . .. . :...:::::::. mKIAA0 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPI-AVIMTPTRELAL 460 470 480 490 500 510 120 130 140 150 160 170 mKIAA1 QIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGL :: . ..:.: . . . :: . .:.. ..:. :..::: ::::. ::. mKIAA0 QITKECKKFSKTLG-LRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLA------ 520 530 540 550 560 180 190 200 210 220 230 mKIAA1 DLASCVKSLDVLVLDEADRLLDMGF-EASINTILEFLPKQRRTGLFSATQTQEVENLVRA :. :: : .::: : ::.. . . : .:.: .:::: . .: :.: mKIAA0 --ANSGKSRVFYYLFSLLFVLDMIFVEADLRIVDNVRP-DRQTVMFSATFPRAMEALARR 570 580 590 600 610 240 250 260 270 280 290 mKIAA1 GLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFS : .:....: ..:. :. .:.. .. . ..:: .:...: :. ...: mKIAA0 ILSKPIEVQVGGRSVVCSD-------VEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFV 620 630 640 650 660 670 300 310 320 330 340 mKIAA1 TCACVEYYGKALEALLK-KVKILCIHGKM-KYKRNKIFMEFRKLQSGILVCTDVMARGID :. :. :.. . . .:: . .: :..:. .:.. .:: :.: :::.: mKIAA0 DKQ--EHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 680 690 700 710 720 730 350 360 370 380 390 400 mKIAA1 IPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEEAYINFLAINQKCPLQE . .. :..:. :.. .::: :::.: :. : : .:. . : mKIAA0 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 740 750 760 770 780 790 410 420 430 440 450 460 mKIAA1 MSLQRNTIDLLPKLRAMALADRAVFEKGMKAFVSFVQAYAKHECSLIFRLKDLDFAGLAR mKIAA0 VPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDS 800 810 820 830 840 850 615 residues in 1 query sequences 1768402 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:49:06 2006 done: Mon Mar 27 10:49:07 2006 Scan time: 0.780 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]