FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0064.ptfa, 502 aa
 vs ./tmplib.26680 library

1768515 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.2173+/-0.00403; mu= 12.9656+/- 0.270
 mean_var=85.4550+/-19.390, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1387

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0488  ( 519 res)   mbg05332                   ( 519)  404   91 3.1e-19


>>mKIAA0488  ( 519 res)   mbg05332                        (519 aa)
 initn: 267 init1: 172 opt: 404  Z-score: 437.7  bits: 90.6 E(): 3.1e-19
Smith-Waterman score: 431;  26.121% identity (28.530% ungapped) in 379 aa overlap (46-419:165-516)

          20        30        40        50        60        70     
mKIAA0 ASRGAANLVVRSSALGNMHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGL
                                     ...:  .:.::... :   :  :: ..  :
mKIAA0 DPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAIL
          140       150       160       170       180       190    

          80        90       100       110       120       130     
mKIAA0 HEQLRKEYGANVVPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLR
       :..:..:..  . : .: :  :::.  ... ::. ::.:.. : .  ..: :. .. :: 
mKIAA0 HQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLS
          200       210       220       230       240       250    

         140       150       160       170       180       190     
mKIAA0 RAQQETQQVPTEEVSLEVLLSNGQKVLVTVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLF
       ..... . :   .: :.: : .:  : : :  .. :..: .:.:::. . .  ..::.::
mKIAA0 ESDENYNGVS--DVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALF
          260         270       280       290       300       310  

         200       210        220       230       240         250  
mKIAA0 LVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDDDVM--ENRVG
        : ..     ::::::   :.:. . : .  :      :    :  . ...:.  .: ..
mKIAA0 EVINH-----SFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLFTTEEEVLLNDNDLA
                 320       330       340       350       360       

            260       270       280       290       300       310  
mKIAA0 LNLLYAQTVSDIEHGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVAD
       .. .. :.:.:...:.: . .:.  ::..:.:. .   .: . .: . :. . :  :. :
mKIAA0 VTYFFHQAVDDVKKGYIKA-EEKSYQLQKLHEQRKMVMYLNMLRTCEGYNEIIFPHCACD
       370       380        390       400       410       420      

            320       330       340         350       360       370
mKIAA0 FPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVPLPSGGTSSPS
         .:   :... . ....:.      ::..   .:.  .:. :             ..  
mKIAA0 SRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW-------------DTDE
        430        440       450       460                    470  

              380       390       400       410       420       430
mKIAA0 RGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRR
       .:     . . :::  .. . .:: : .:   .:  :.. .  ::  .:           
mKIAA0 EG-----MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY        
                 480       490       500       510                 

              440       450       460       470       480       490
mKIAA0 RVGGTLRRSDSQQAVKSPPLLESPDASRESMVKLSSKLSAVSLRGIGSPSTDASASAVHG




502 residues in 1 query   sequences
1768515 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:30 2006 done: Mon Mar 27 10:11:31 2006
 Scan time:  0.720 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]