FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1315.ptfa, 449 aa
 vs ./tmplib.26680 library

1768568 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.3254+/-0.00517; mu= 7.3103+/- 0.346
 mean_var=142.5497+/-32.775, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1074

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1606  ( 2063 res)   mbg01518                  (2063)  203   43 0.00016


>>mKIAA1606  ( 2063 res)   mbg01518                       (2063 aa)
 initn: 189 init1:  96 opt: 203  Z-score: 173.5  bits: 43.5 E(): 0.00016
Smith-Waterman score: 205;  30.288% identity (34.239% ungapped) in 208 aa overlap (259-448:1829-2030)

      230       240       250       260       270       280        
mKIAA1 GCQVICIDEDTNKEGKMGRANSPLESIVEETCIDLTSESPGSCEIKRHNLKSE---PPSK
                                     .:.. .:  :   : .:   .::   :  .
mKIAA1 LCSAETPRLPPQTGAVVCSVRRNQAGPEVVSCLSTSSLPPEEGEDQRAAANSETIAPHRE
     1800      1810      1820      1830      1840      1850        

         290              300       310       320           330    
mKIAA1 LDCLE-LPET------LGNGHKKRKNSPGVSHSSQKKQRKDIDLSS----EKTQRLSPNS
        .  : ::::      : .  . :  . :  :   :   ..  . :    : ..  .:  
mKIAA1 ASETERLPETVEHPAPLPSPVSTRTRDTGRRHICGKAGSQSWLIESRAEAEAAHVAAPIC
     1860      1870      1880      1890      1900      1910        

          340         350       360       370       380        390 
mKIAA1 DRNGDAHRKQASKK--REPAVNETSLSSEASPEVKGSTAVLAASPASLSAKNV-IKKKGE
       .... :. ..:. :  :: .. : : ..  .::  :  :.  :: :.. :.:  ... ::
mKIAA1 EKSSGARASEAAPKTARE-VLAEDSGTQGMGPE--G--ALPKASEATVCANNSKVSSTGE
     1920      1930       1940      1950          1960      1970   

             400       410       420        430       440          
mKIAA1 IIVSWTRNDDREILLECQKRMPSLKTFTYLAVKL-NKNPNQVSERFQQLKKLFEKSKCR 
        .: :::. :: ::  ::..  . .::. .. .: ::.: .::.::..: .::. . :. 
mKIAA1 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH-TACEA
          1980      1990      2000      2010      2020       2030  

mKIAA1 SSEDEDDATSTSNADQLSDHGDLLSEEELDE
           2040      2050      2060   




449 residues in 1 query   sequences
1768568 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:40:42 2006 done: Mon Mar 27 10:40:43 2006
 Scan time:  0.660 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]