FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0002.ptfa, 555 aa
 vs ./tmplib.26680 library

1768462 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.0067+/-0.00383; mu= 17.9591+/- 0.256
 mean_var=68.7327+/-15.730, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1547

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0098  ( 542 res)   mpk03388                   ( 542)  810  190 3.7e-49


>>mKIAA0098  ( 542 res)   mpk03388                        (542 aa)
 initn: 707 init1: 322 opt: 810  Z-score: 974.9  bits: 190.2 E(): 3.7e-49
Smith-Waterman score: 810;  31.346% identity (32.535% ungapped) in 520 aa overlap (23-531:23-534)

               10        20        30        40        50        60
mKIAA0 AVDCGRAMALHVPKAPGFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMN
                             .:  ... ::: :.  .:.: : .:.: ::. ::::..
mKIAA0 TMASVGTLAFDEYGRPFLIIKDQDRKSRLMGLE-ALKSHIMAAKAVANTMRTSLGPNGLD
               10        20        30         40        50         

               70        80        90       100       110       120
mKIAA0 KMVINRLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLE
       ::....   . .:::.::::  ..:.:  ::..:  :. :..:.::::. :.:.::::::
mKIAA0 KMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLE
      60        70        80        90       100       110         

              130       140       150       160       170          
mKIAA0 LAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCSAKNLRDVDEVSSLL---RTSIMS
        ::.::  :.   .. .::: : . : . : ..   : : : :...   :.   .:.. :
mKIAA0 EAEQLLDRGIHPIRIADGYEQAARIAIQHLDKI---SDKVLVDINNPEPLIQTAKTTLGS
     120       130       140       150          160       170      

       180        190       200         210       220       230    
mKIAA0 KQYGS-ETFLAKLIAQACVSIFPDSGNFNVD--NIRVCKILGSGIYSSSVLHGMVFKKET
       :  .: .  .:.. ..: ...  :    .::   :.:   .:. . ......:..  :. 
mKIAA0 KVINSCHRQMAEIAVNAVLTV-ADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDF
        180       190        200       210       220       230     

            240       250       260       270       280       290  
mKIAA0 EGDVT--SVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAG
              .: :::::. .:::.    .::  . . ..:.   ..: :.. .. ..: :  
mKIAA0 SHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKE
         240       250       260       270       280       290     

            300       310       320       330       340       350  
mKIAA0 TGANVIVTGGKVADIALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMG
       ::::. .      : : :   . ..  ::  .  ... .  ..:.  .:...  ..:..:
mKIAA0 TGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLG
         300       310       320       330       340       350     

            360         370       380       390       400       410
mKIAA0 HCDSVYLSEVGDT--QVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLT
           :     : :  ...:... :.. :. :: .::..  .... .:.. :.. ... : 
mKIAA0 FAGVVQEISFGTTKDKMLVIEKCKNSRAV-TIFIRGGNKMIIEEAKRSLHDALCVIRNLI
         360       370       380        390       400       410    

              420       430       440       450       460       470
mKIAA0 RDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEV
       ::.:.: ::::.::  :  ... .. :: :::::.. ::.:.:.:: ::.::::..  ..
mKIAA0 RDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQT
          420       430       440       450       460       470    

               480       490       500       510       520         
mKIAA0 ISKLYSVH-QEGNKNVGLDIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVD
       .... . . .:.:  .:.:   .  . .::    ...: .::   :.:::. .  .:..:
mKIAA0 MTEVRARQVKESNPALGIDCLHK--GSNDMQYQHVIETLIGKKQQISLATQMVRMILKID
          480       490         500       510       520       530  

     530       540       550     
mKIAA0 QIIMAKPAGGPKPPSGKKDWDDDQND
       .:                        
mKIAA0 DIRKPGESEE                
            540                  




555 residues in 1 query   sequences
1768462 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:10:17 2006 done: Mon Mar 27 10:10:18 2006
 Scan time:  0.730 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]