FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1266.ptfa, 522 aa vs ./tmplib.26680 library 1768495 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.6789+/-0.00455; mu= 16.5631+/- 0.305 mean_var=90.2400+/-20.573, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.1350 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0071 ( 316 res) mbg01793 ( 316) 170 43 4.7e-05 mKIAA1343 ( 395 res) mbp04105 ( 395) 157 40 0.00031 mKIAA1610 ( 554 res) mpm01218 ( 554) 158 41 0.00034 mKIAA1193 ( 524 res) mej02325 ( 524) 148 39 0.0012 >>mKIAA0071 ( 316 res) mbg01793 (316 aa) initn: 84 init1: 84 opt: 170 Z-score: 183.2 bits: 42.8 E(): 4.7e-05 Smith-Waterman score: 170; 32.609% identity (36.585% ungapped) in 92 aa overlap (277-359:23-113) 250 260 270 280 290 300 mKIAA1 DTLYRHGYDLSSAISVLVPLGGPVLCRDEMEEWSASEACLFEEALEKYGKDFNDIRQDFL .::.. . :::.:. .:: :. :.: .: mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQ-ML 10 20 30 40 50 310 320 330 340 350 mKIAA1 PWKSLTSIIEYYYMWKTT-------DRYVQQKRLKAAEAESKLKQVY--IPTYSKPNPNQ : ::..:....:: :: : ::...... . :.:..:... :. . .::. mKIAA0 PDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEETNGSNPVDIEIDPNK 60 70 80 90 100 110 360 370 380 390 400 410 mKIAA1 ISSSNGKAGTVNGAVGTQFQPQSALLGRACESCYATQSHQWYSWGPPNMQCRLCATCWLY :. mKIAA0 ESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQL 120 130 140 150 160 170 >>mKIAA1343 ( 395 res) mbp04105 (395 aa) initn: 137 init1: 90 opt: 157 Z-score: 168.4 bits: 40.4 E(): 0.00031 Smith-Waterman score: 205; 26.946% identity (33.835% ungapped) in 167 aa overlap (158-324:1-133) 130 140 150 160 170 180 mKIAA1 VLSYLDKEDTFFYSLVYDPSVKTLLADKGEIRVGPKYQADIPDMLPEGDSDEREQSKLEV .::: .::: ::.. : : . .... . mKIAA1 MRVGAEYQARIPEFDP-GATKYTDKDNGGM 10 20 190 200 210 220 230 240 mKIAA1 KVWDPNSPLTDRQIDQFLVVARAVGTFARALDCSSSVRQPSLHMSAAAASRDITLFHAMD ::.: . : ..:.....:. . .:.: :. mKIAA1 LVWSPYHSIPDAKLDEYIAIAKEKHGY--------NVEQ------------------ALG 30 40 50 60 250 260 270 280 290 300 mKIAA1 TLYRHGYDLSSAISVLVPLGGPVLCRDEMEEWSASEACLFEEALEKYGKDFNDIRQDFLP :. : ... .... : : : .::.. . :::.:. .::.:. :.: .:: mKIAA1 MLFWHKHNIEKSLADL-PNFTPF-----PDEWTVEDKVLFEQAFSFHGKSFHRIQQ-MLP 70 80 90 100 110 310 320 330 340 350 360 mKIAA1 WKSLTSIIEYYYMWKTTDRYVQQKRLKAAEAESKLKQVYIPTYSKPNPNQISSSNGKAGT :...:...::: :: : mKIAA1 DKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEEAHPMDGNDSDYDPK 120 130 140 150 160 170 >>mKIAA1610 ( 554 res) mpm01218 (554 aa) initn: 211 init1: 127 opt: 158 Z-score: 167.8 bits: 40.8 E(): 0.00034 Smith-Waterman score: 198; 22.157% identity (25.418% ungapped) in 343 aa overlap (61-377:120-444) 40 50 60 70 80 90 mKIAA1 LIRRIEELNKTASGNVEAKVVCFYRRRDISNTLIMLADKHAKETEEESETPVEADLTEKQ .:. . ... .: :::.: .:: ... mKIAA1 GETNFSSEIEDLAREGDMPIHELLSLYGYDSTVRLPEEEEEEEEEEEGEDDEDADNDDNS 90 100 110 120 130 140 100 110 120 130 140 mKIAA1 KHQLKHRELFL---SRQYESLPATHIRGKCSVALLNETESV----LSYLDKEDTFFYSLV . ...: . : : . ... . ::. . : . .:.: .. . mKIAA1 GCSGENKEENIKDSSGQEDETQSSNDDPSQSVTSQDAQEIIRPRRCKYFDTNSEIEEESE 150 160 170 180 190 200 150 160 170 180 190 200 mKIAA1 YDPSVKTLLADKGEIRVGPKYQADIPDMLPEGDSDEREQSKLEVKVWDPNSPLTDRQIDQ : . : :: :: .::.:: . . .:. . . .:::. : .... mKIAA1 EDEDYIPSEDWKKEIMVGSMFQAEIPVGVCRYKENEKVYENDDQLLWDPEC-LPEEKVVV 210 220 230 240 250 260 210 220 230 240 250 260 mKIAA1 FLV-VARAVGTF--ARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHGYDLSSAI :: ..: .: ..:. .: ... . . : . ..: : .....: mKIAA1 FLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCS----FDTEEALRRLRFNVKAA- 270 280 290 300 310 320 270 280 290 300 310 320 mKIAA1 SVLVPLGGPVLCRDEMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM :.:. :. : ::..:. :::::. :. . . .:. . .::: mKIAA1 ------------REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYM 330 340 350 360 370 330 340 350 360 mKIAA1 WKTTDRY---VQQKRLKAAE----------AESKLKQVYIPTYSK---PNPNQISSSNGK :: ..:: .:: :. . . : . . :. : :. .:::.. mKIAA1 WKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQ 380 390 400 410 420 430 370 380 390 400 410 420 mKIAA1 AGTVNGAVGTQFQPQSALLGRACESCYATQSHQWYSWGPPNMQCRLCATCWLYWKKYGGL . .:::... : mKIAA1 SEKEDGAVSSRNQNGVSSNGPGEILNKEEVKVEGLHVNGPTGGNKKPLLTDMDTNGYEAN 440 450 460 470 480 490 >>mKIAA1193 ( 524 res) mej02325 (524 aa) initn: 231 init1: 139 opt: 148 Z-score: 157.5 bits: 38.8 E(): 0.0012 Smith-Waterman score: 201; 28.022% identity (31.288% ungapped) in 182 aa overlap (155-333:184-349) 130 140 150 160 170 180 mKIAA1 TESVLSYLDKEDTFFYSLVYDPSVKTLLADKGEIRVGPKYQADIPDMLPEGDSDEREQSK : :: :::..:::. . . :. ... mKIAA1 SGSRFLAGDNGPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILHLNRHCDKIYENE 160 170 180 190 200 210 190 200 210 220 230 240 mKIAA1 LEVKVWDPNSPLTDRQIDQFLVVARAVGTFARALDCSSSVRQPSLHMSAAAASRDITLFH .. .:.: : : .:....:: ::: : . .. :.. . .. . . .:.. mKIAA1 DQL-LWSP-SVLPEREVEEFLY--RAVKR--RWQEMAG----PQIPEGEVVKDSEQALYE 220 230 240 250 260 250 260 270 280 290 300 mKIAA1 AMDTLYRHGYDLSSAISVLVPLGGPVLCRDEMEEWSASEACLFEEALEKYGKDFNDIRQD : . .... :. : .. :. :: . :: : ::.... .::.:. :. . mKIAA1 ----LVKCNFNVEEALRRLR-FNVKVI-RDGLCAWSEEECRNFEHGFRVHGKNFHLIQAN 270 280 290 300 310 310 320 330 340 350 360 mKIAA1 FLPWKSLTSIIEYYYMWKTTDRY---VQQKRLKAAEAESKLKQVYIPTYSKPNPNQISSS . .:. .::::.:: ..:: .:: :: mKIAA1 KVRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKFVSSGTTDTEQDLDGLDPDGHARL 320 330 340 350 360 370 370 380 390 400 410 420 mKIAA1 NGKAGTVNGAVGTQFQPQSALLGRACESCYATQSHQWYSWGPPNMQCRLCATCWLYWKKY mKIAA1 HSENVDIEAGGLDQPGVGSDDLPSSEPGPRPFQQLDEPPAVPSLQQPTSLAASAELPPAA 380 390 400 410 420 430 522 residues in 1 query sequences 1768495 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:38 2006 done: Mon Mar 27 10:39:39 2006 Scan time: 0.700 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]