FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4154.ptfa, 702 aa vs ./tmplib.26680 library 1768315 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.5813+/-0.0062; mu= 3.3931+/- 0.413 mean_var=185.2531+/-42.862, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.0942 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0887 ( 429 res) mbh01028 ( 429) 243 45 1.4e-05 mKIAA0794 ( 367 res) mph02383 ( 367) 205 40 0.00046 >>mKIAA0887 ( 429 res) mbh01028 (429 aa) initn: 466 init1: 115 opt: 243 Z-score: 192.3 bits: 45.4 E(): 1.4e-05 Smith-Waterman score: 460; 29.014% identity (32.803% ungapped) in 355 aa overlap (360-699:96-424) 330 340 350 360 370 380 mKIAA4 SEEQSTDVHMVSDSDGDDFEDASEFGVDDGEVFGMASSTLRKSPMMPENAENEGDALLQF ..: .: .: .: . .. :: ...: mKIAA0 VVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRFIRPDPR-SRVTDPVGD-IVSF 70 80 90 100 110 120 390 400 410 420 430 440 mKIAA4 TAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCA : .:: ::::. :. :...: :. ..: .::: :. .. :: . ::: mKIAA0 MHSFEEKYGRAHPVFYQGTYSQALNDA----KRELRFLLVYLHGDDHQDSDEFCRNALCA 130 140 150 160 170 450 460 470 480 490 500 mKIAA4 ESIVSYLSQNFITWAWDLTKDTNRARFLTMCNRHFGSVIAQTIRTQKTDQFPLFLIIMGK ..: ... .. :: .::. . : ..:..: . .:.. .:: : mKIAA0 PEVISLINSRMLFWA----CSTNKPE---------GYRVSQALRE---NTYPFLAMIMLK 180 190 200 210 220 510 520 530 540 550 560 mKIAA4 RSSNEVLNVIQGNTTVDELMMRLMAAMEIFSAQQQEDIKDEDEREAREN---VKREQDEA :.. ..: :.:. .: :. :.: .... ::: :.. ....:::: mKIAA0 DRRMTVVGRLEGLIQPDDLINQLTFIMD---ANQTYLVSERLEREERNQTQVLRQQQDEA 230 240 250 260 270 280 570 580 590 600 610 mKIAA4 YRLSLEAD----RAKREAHEREMAEQFRLEQIRKEQEEEREAIRLSLE---QALPPEPKE : ::.:: : ::: .::. .. ...: . .:..:. .. : . :::::. mKIAA0 YLASLRADQEKERKKREEKERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSP 290 300 310 320 330 340 620 630 640 650 660 670 mKIAA4 ENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEFKLLSTFPRRDV--- .. : : :. .. :. .:::: :..: .. ::. : ..:.. ..:::: . mKIAA0 DDPESV-KIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCV 350 360 370 380 390 680 690 700 mKIAA4 -TQLDPNK-SLLEVNLFPQETLFLQAKE .. :: .: :..: :.::.: mKIAA0 PSEEWPNPPTLQEAGLSHTEVLFVQDLTDE 400 410 420 >>mKIAA0794 ( 367 res) mph02383 (367 aa) initn: 200 init1: 167 opt: 205 Z-score: 165.2 bits: 40.1 E(): 0.00046 Smith-Waterman score: 205; 28.902% identity (31.250% ungapped) in 173 aa overlap (537-701:199-366) 510 520 530 540 550 560 mKIAA4 MGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFSAQQQE-DIKDEDEREARENVKREQDE :.::.... .. ::.: ::. . mKIAA0 EAAIRASLQETHFDSAQAKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKS--- 170 180 190 200 210 220 570 580 590 600 610 mKIAA4 AYRLSLEADRAKR-EAHEREMAEQ-FRLEQIRKEQEE-----EREAIRLSLEQALPPEPK : : . : ..: : ..: ..: : : ... . :....: :.. mKIAA0 --RKSPHKDLGHRKEENRRPLTEPPARTEPGTATNHQGLPSMDSEVLEMSPEKSDGIVEG 230 240 250 260 270 280 620 630 640 650 660 670 mKIAA4 EENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEFKLLSTFPRRDVTQ . : ..: .: :.:. . . . :: . : :::.: ..:.::..:::: ... mKIAA0 IDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSH 290 300 310 320 330 340 680 690 700 mKIAA4 LDPNKSLLEVNLFPQETLFLQAKE :: . .: :..: ::::.:.: .. mKIAA0 LDYDITLQEAGLCPQETVFVQERN 350 360 702 residues in 1 query sequences 1768315 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:03:33 2006 done: Mon Mar 27 11:03:34 2006 Scan time: 0.890 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]