FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0974.ptfa, 369 aa
 vs ./tmplib.26680 library

1768648 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.0012+/-0.00537; mu= 3.8446+/- 0.359
 mean_var=149.2023+/-35.118, 0's: 0 Z-trim: 3  B-trim: 11 in 1/35
 Lambda= 0.1050

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4166  ( 712 res)   mfj45040                   ( 712)  212   43 4.9e-05


>>mKIAA4166  ( 712 res)   mfj45040                        (712 aa)
 initn: 443 init1: 199 opt: 212  Z-score: 182.8  bits: 43.4 E(): 4.9e-05
Smith-Waterman score: 338;  27.854% identity (36.637% ungapped) in 438 aa overlap (17-366:208-628)

                             10        20        30        40      
mKIAA0               HFLYQQQPWKRYKFSQELDQNATEKVQAMFTAIDELLYEQQLSAHT
                                     :.:. ...::. .:  ..:::.: ..: .:
mKIAA4 AHNSWPGSSTQSSTTGLSTERSSVSSWRDDEFDKVSAQKVHQLFWEVEELLFEGKVSPQT
       180       190       200       210       220       230       

         50        60        70         80         90              
mKIAA0 QGLQKECQQWAASFPHLRILGRQIITPS-EGYGLYPRS-PSAVSASHEAT------LSQE
       :.:  ::..::    :::..:::.. :. ::.  .  : ::  ::.:::        :. 
mKIAA4 QNLLAECSEWARRSLHLRVVGRQLVPPTDEGFQHFQGSLPS--SATHEALPHVPDHTSSS
       240       250       260       270         280       290     

      100                                          110             
mKIAA0 RE---------------------------------STMEEGFH--GNKSE--AATEKQ--
       ::                                 :  :: .:  ::  :  :  .::  
mKIAA4 RELCISGSQIVPEVHSASALTDPDGTESADLTSCSSLKEEVYHVDGNIEEYFAFDRKQDG
         300       310       320       330       340       350     

                     120       130       140       150       160   
mKIAA0 ----------------KLGYPPIAPFHCMKEDVLAHVFDNVWSKAVGCMEQLTRSHWEGC
                       . : :::.:  :... : :.:::.::...:  .:.: :. ::. 
mKIAA4 DEHLGQSPALRGRKRHRHGLPPISPDDCIRDAVAAEVFDHVWTNVVEILEDLIRKTWESA
         360       370       380       390       400       410     

           170        180       190       200              210     
mKIAA0 ASDDESNVEITRL-DSGSPYVLNEQHPLVLPRVPQSKV-----PSITS--SPMSFCQ---
        .  ... :  .. .. ::.::  .    .  :: :.      ::..   .: .: :   
mKIAA4 LTGGKKHKEKLKVAENRSPHVLMSRLSTDVCSVPPSRSSDTLQPSLAPHFNPPQFPQLHR
         420       430       440       450       460       470     

             220        230       240       250       260       270
mKIAA0 -ASGHQPNVSGLL-IHGMPLQPRNLSLMDKLLPVTADTLSSPSPMTLGRNNLLPPIGTVE
        .:.   ..::.. :.. ::: :     :.      : : . .  . .:. :    : . 
mKIAA4 FSSNFYSDLSGVMTIQAKPLQQRPTYSADRTQNDQDDKLPGGGVGASSRHRL----GRI-
         480       490       500       510       520           530 

              280       290       300       310            320     
mKIAA0 VEHLSAMGPQRPTKSHGDSSRARSAVVDEPNQQPQERLLLP-VFS----RPNTTQS---F
          :.: :::  .:.     :  : . :     :: ::  : :.:    : .  :.   .
mKIAA4 ---LDARGPQTSVKKTPVHRRLPSIASD-----PQ-RLKTPTVYSDEILRGTKLQTGIDY
                 540       550             560       570       580 

            330           340       350       360                  
mKIAA0 LPDTQYRSSCASEYP----HQARPGRGSAGPQSHGSTKPQSRGGPISRTRQ         
       ::.    ..  :. :    . ..:. ...: .   :..:     : ::.           
mKIAA4 LPSPAAVQTSRSRLPPIGSETGEPNTAASGSRPV-SVRPYRGRHPQSRVFSAMPDSIERS
             590       600       610        620       630       640

mKIAA4 PLRERTIVLEQLSRPSTTHTFRSDTPRKGSLTPVEFVAHTWTGQSILTGSQYLPKSYQRA
              650       660       670       680       690       700




369 residues in 1 query   sequences
1768648 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:33:03 2006 done: Mon Mar 27 10:33:04 2006
 Scan time:  0.590 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]