FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1819.ptfa, 443 aa vs ./tmplib.26680 library 1768574 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.7646+/-0.00641; mu= -4.4956+/- 0.424 mean_var=239.5516+/-58.057, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.0829 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1816 ( 826 res) mfj37232 ( 826) 448 66 8.3e-12 mKIAA0200 ( 1045 res) mpf00402 (1045) 396 60 7.3e-10 >>mKIAA1816 ( 826 res) mfj37232 (826 aa) initn: 155 init1: 93 opt: 448 Z-score: 304.3 bits: 66.4 E(): 8.3e-12 Smith-Waterman score: 475; 26.782% identity (30.318% ungapped) in 463 aa overlap (9-441:387-825) 10 20 30 mKIAA1 LDQHTVVGQNTGPSPSPNSCSNPNTGS-GYMNSQ---- ::. :: : . :. . :. :...:: mKIAA1 VMNPPMAYAALPAHGQEQHAVGIPRTTGPMQNSVPSGSGSMVSGASPGGLGFLGSQPQAA 360 370 380 390 400 410 40 50 60 70 80 mKIAA1 ---QSLLNQ--QMM--GKKQTLQRPTMEQKQQLLLQQQMLADAEKLSPQDQMNRHLTRPP : :..: :.: :.: :.. ..:.:: :::. . . :. :. .. :: : mKIAA1 IMKQMLMDQRAQLMEHQKQQFLREQRQQQQQQQQQQQQQQQQQQILAEQQLQQPHL---P 420 430 440 450 460 470 90 100 110 120 130 140 mKIAA1 PDYKDQRRNTGTLQPAAQYSGGSSTVSLNSNQALTNPVSTHTILTPNSSLMSTSHGMRMP .. .:.:: .: . :..:. . .. ::. . . . ... :...:. . .. mKIAA1 RQHLQQQRNPYPVQQVNQFQGSPQDIAAVRNQVALQSMRASRLIAQNAGMMGMGPSQNPG 480 490 500 510 520 530 150 160 170 180 190 200 mKIAA1 LLSTV---QNIGM--YGNLPCNQPGTYNVTSTMNQLTQQRNTTQLITNQNNPLMSRPSPL ..:. ..::. :. : .::: ::... :.:. :. : . . .:. :: : mKIAA1 TMATAAAQSEIGLASYSAPPTSQPGMYNMNTGMTQMLQHSNQSGMGIPHNQSQGPRP-PA 540 550 560 570 580 590 210 220 230 240 250 mKIAA1 GANNGNNVATFG----AGSAGSS--QQLRPNLAHSLS-GMSAQRSSTVMITANTTATNWA .... . :. :: ..:: :. :::. .....: .. : ..:: :.. : :: mKIAA1 SSQGVGMVSGFGQSMLVNSALSQQHQQLKGSVGQALPRPQGPPRLQSVMGTVQQGAQNWQ 600 610 620 630 640 650 260 270 280 290 300 310 mKIAA1 SQEVTGKQQEALKSTGVRFPTSTPAAYTPNQSLQPGVGSQPFSQRAVAPPSQLSPAVQMR .. . : ...: : .. :.: : :. :: . .: : : ... : . . . .: mKIAA1 QRSLQGVPG---RTSGELGPFNNGASY-PLQAGQPRLTKQHFPQ-GLSQPVMDANTGAVR 660 670 680 690 700 320 330 340 350 360 mKIAA1 PMNQMNQALNGQTLGSLRGLNLRPNQLAAQSLSNMNPSGTGLNHPRTGT---NQPPS--- .: :.. : . .: : .: :.: . : ::.. : .:::. mKIAA1 TLNPA--AMGRQMMPTLAG-----QQSASQVRPLVMP---GLSQGVPGMPAFSQPPAQQQ 710 720 730 740 750 370 380 390 400 410 420 mKIAA1 LTPNAFPSSNQSSRAFQGPDHGSDLAFDFLSQQSDSMCPALNSDADFIDSLLKTEPGNDD .. . : .:::.. . : ..:..... .. . :.: ...:..::..:. :: :. mKIAA1 IAGGNFAASNQGQAYERTP--AQDMSYSYSGEGVGAAFPGLPDSTDLVDSIIKSGPG-DE 760 770 780 790 800 810 430 440 mKIAA1 WMKDINLDEILGSNS ::.. :::..:. mKIAA1 WMQE--LDELFGNP 820 >>mKIAA0200 ( 1045 res) mpf00402 (1045 aa) initn: 134 init1: 87 opt: 396 Z-score: 269.4 bits: 60.2 E(): 7.3e-10 Smith-Waterman score: 427; 26.457% identity (29.280% ungapped) in 446 aa overlap (10-441:628-1044) 10 20 30 mKIAA1 LDQHTVVGQNTGPSPSPNSCSNPNTGSGYMNSQQ--SLL ..: .:. . :. :. : :..::: ... mKIAA0 PKSGNMPFRSLVPPGQEQNPSSVPVAAPAASVGTQPTVSVASTHNS-SPYLSSQQQAAVM 600 610 620 630 640 650 40 50 60 70 80 90 mKIAA1 NQQMMGKKQTLQRPTMEQKQQLLLQQQMLADAEKLSPQDQMNRHLTRPPPDYKDQRRNTG .:... : :: ..: ::.: .:..::. :: .:..::::::::.:.: ..: mKIAA0 KQHQLLLDQQKQREQLQQ-QQFLQRQHLLAEQEK----QQFQRHLTRPPPQYQDPTQSTF 660 670 680 690 700 710 100 110 120 130 140 150 mKIAA1 TLQPAAQYSGGSSTVSLNSNQALTNPVSTHTILTPNSSLMSTSHGM----RMPLLSTVQN : ..:..: :..: .: . .: : .. ..::: . : .: : :. mKIAA0 P-QQVGQFTGPSAAVPGMNNLGPSNS-SCPRVFPQPGTLMSMGPGHAPVSSLPSSSGQQD 720 730 740 750 760 160 170 180 190 200 210 mKIAA1 IGMY---GNLPCNQPGTYNVTSTMNQLTQQRNTTQLITNQNNPLMSRPSPLGANNGNNVA :. :. : . :...: . :.. : :. . : : . .: : ....: mKIAA0 RGVAQFTGSQSLPQNSLYGMASGLAQIVAQPPPQATSTHAHIP---RQTNVGQNASTSAA 770 780 790 800 810 820 220 230 240 250 260 mKIAA1 TFGAGSAGSS----QQLRPNLAHSLSGMSAQRSSTVMITANTTATNWASQEVTGKQQEAL .: .: ::. :. . .: .:. .. : :..: . :.. : : . . .... mKIAA0 -YGQNSLGSASLSQQHSKGTLPPGLTKPQVPRVSAAMGSQNAS---WQHQGMPNLSSQTS 830 840 850 860 870 880 270 280 290 300 310 320 mKIAA1 KSTGVRFPTSTPAAYTPNQSLQPGVGSQPFSQRAVAPPSQLSPAVQMRPMNQMNQALNGQ ...: :..:. . . :. ...: ::: . : ..: . . : ...: mKIAA0 GNSSVNPFTAAPSFHIQQAHLK--LAGQQFSQ--AMPSRPMAPLSSAGAAGPMLPPVSAQ 890 900 910 920 930 330 340 350 360 370 380 mKIAA1 TLGSLRGLNLRPNQLAAQSLSNMNPSGTGLNHPRTGT-NQPPSLTPNAFPSSNQSSRAFQ .: . . :. :.: ...::: :. :. .: :. .. :. . ..:. mKIAA0 QRNSAPA-SAPPQAAPQQGLPGLSPSG-----PELGAFGQSPTSQMSGRPGLH-CAQAYP 940 950 960 970 980 990 390 400 410 420 430 440 mKIAA1 GPDHGSDLAFDFLSQQSDSMCPALNSDADFIDSLLKTEPGNDDWMKDINLDEILGSNS :..: : . .: ..: .. . .:.::::::.. ...:... ::..:::. mKIAA0 VRTMGQELPFAYSGQPGSSGLSSVAGHTDLIDSLLKNRT-SEEWINE--LDDLLGSQ 1000 1010 1020 1030 1040 443 residues in 1 query sequences 1768574 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:53:48 2006 done: Mon Mar 27 10:53:49 2006 Scan time: 0.670 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]