FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00318.ptfa, 471 aa
 vs ./tmplib.26680 library

1768546 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.7555+/-0.00668; mu= 1.1979+/- 0.445
 mean_var=239.5989+/-56.074, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0829

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0832  ( 466 res)   mbg00280                   ( 466)  741  101 1.5e-22
mKIAA4145  ( 363 res)   mbg01377                   ( 363)  371   57 2.6e-09


>>mKIAA0832  ( 466 res)   mbg00280                        (466 aa)
 initn: 618 init1: 337 opt: 741  Z-score: 497.2  bits: 101.3 E(): 1.5e-22
Smith-Waterman score: 774;  32.957% identity (36.318% ungapped) in 443 aa overlap (36-466:51-464)

          10        20        30        40          50        60   
mFLJ00 DTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIG--SPLGSPGQLHSPISTL
                                     ::   ::  ...  :: ::     :  ::.
mKIAA0 ISYLIMMLLCRMSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGSYSSTM
               30        40        50        60        70        80

            70        80        90       100       110       120   
mFLJ00 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPLGLN
       ..  ::.  :      :.       :..: ::   ::  . . ..  :::          
mKIAA0 NGHQNGLDSP------PL------YPSAPILG---GSGPVRKLYDDCSST----------
               90                   100          110               

           130        140       150       160       170       180  
mFLJ00 GVLKVPAHPSGNM-ASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRD
        ... :      :  :. :..: .::: .:: :::: :::.::.::.::.. .. :.:  
mKIAA0 -IVEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFNRTIQGNIEYSCPA
          120       130       140       150       160       170    

            190       200       210       220          230         
mFLJ00 NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG---KDRNENEVESTSSANEDM
       ...: : ::.:. :: ::..::: .:: .:.:. .: ::   : . . ..:..   : ..
mKIAA0 TNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQL
          180       190       200       210       220       230    

           240       250       260       270       280       290   
mFLJ00 ------PVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAK
             : .::.   :..::. . :.  .  . :.:    .:..:. ::..: ... :::
mKIAA0 VQPAKKPYNKIVSHLLVAEPE-KIYAMPDPTV-PDSDIKALTTLCDLADRELVVIIGWAK
          240       250        260        270       280       290  

           300       310       320       330       340       350   
mFLJ00 RIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGA
       .:: :: : : ::. ::...: :.:: .  .::.. .: .. :    . ..... ::.  
mKIAA0 HIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLD
            300       310       320       330       340       350  

           360       370       380       390       400       410   
mFLJ00 IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYC
       . . .: .::.:...:...: :.  :.::.: : ::  . .   :. :.. .. .:. : 
mKIAA0 LNNAIL-QLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE
             360       370       380       390       400       410 

           420       430       440       450       460       470 
mFLJ00 KHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT
         .. :.: : .:.:. :: ::. . : ..:.. .:: : .:.  ...:::::     
mKIAA0 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV   
             420       430       440       450       460         

>>mKIAA4145  ( 363 res)   mbg01377                        (363 aa)
 initn: 342 init1: 219 opt: 371  Z-score: 259.4  bits: 57.0 E(): 2.6e-09
Smith-Waterman score: 371;  31.507% identity (32.701% ungapped) in 219 aa overlap (255-465:130-348)

          230       240       250       260        270       280   
mFLJ00 NENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGL-NPSSPNDPVTNICQAADK
                                     ..:.:  .. . .:      :  ::..:..
mKIAA4 DGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASR
     100       110       120       130       140       150         

           290       300       310       320       330       340   
mFLJ00 QLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR
        ::  ..::. :: :. :  : .. :.:: ::::.  .... . ... . .::. ..  .
mKIAA4 LLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQ
     160       170       180       190       200       210         

              350           360       370       380       390      
mFLJ00 NSAHS---AG--VGAIFDRV--LTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
       :: .    .:  .  .....  : :. ..:  ...:  : . :.:::::.::  ::.. .
mKIAA4 NSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTGTS
     220       230       240       250       260       270         

        400       410       420       430       440       450      
mFLJ00 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI
       ..: ..::.   :. : .. : :.  :.:..:.:::::: .. .  :.:::  :::.. :
mKIAA4 QIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSI
     280       290       300       310       320       330         

        460       470          
mFLJ00 DTFLMEMLEAPHQAT         
       :...  .:.               
mKIAA4 DSIIPYILKMETAEYNGQITGASL
     340       350       360   




471 residues in 1 query   sequences
1768546 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:09:19 2006 done: Mon Mar 27 10:09:20 2006
 Scan time:  0.670 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]