# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpj01782.fasta.nr -Q ../query/mFLJ00318.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00318, 471 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7911665 sequences Expectation_n fit: rho(ln(x))= 5.6921+/-0.000191; mu= 9.5557+/- 0.011 mean_var=97.6484+/-18.602, 0's: 31 Z-trim: 72 B-trim: 7 in 1/67 Lambda= 0.129790 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Ret ( 467) 3160 601.9 1.1e-169 gi|74194825|dbj|BAE26004.1| unnamed protein produc ( 467) 3148 599.7 5.2e-169 gi|110781215|emb|CAL25727.1| retinoid X receptor a ( 467) 3134 597.1 3.2e-168 gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retin ( 467) 3123 595.0 1.3e-167 gi|149249157|ref|XP_001477381.1| PREDICTED: simila ( 629) 3096 590.1 5.5e-166 gi|148676425|gb|EDL08372.1| retinoid X receptor al ( 457) 3088 588.5 1.2e-165 gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapi ( 516) 3082 587.4 2.9e-165 gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Clo ( 472) 3063 583.8 3.2e-164 gi|4003528|gb|AAC95154.1| retinoic acid receptor R ( 479) 3063 583.8 3.3e-164 gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Ret ( 462) 3059 583.0 5.3e-164 gi|194225999|ref|XP_001917400.1| PREDICTED: simila ( 587) 3054 582.2 1.2e-163 gi|84579197|dbj|BAE73032.1| hypothetical protein [ ( 462) 3042 579.8 4.9e-163 gi|126297986|ref|XP_001372307.1| PREDICTED: simila ( 489) 3038 579.1 8.5e-163 gi|83026436|gb|ABB96254.1| retinoid X receptor, al ( 452) 2987 569.5 6e-160 gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma ( 467) 2987 569.5 6.2e-160 gi|114627460|ref|XP_520345.2| PREDICTED: hypotheti ( 601) 2984 569.1 1.1e-159 gi|224073677|ref|XP_002196179.1| PREDICTED: retino ( 781) 2985 569.4 1.2e-159 gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculu ( 439) 2976 567.5 2.5e-159 gi|149039210|gb|EDL93430.1| retinoid X receptor al ( 439) 2956 563.7 3.3e-158 gi|149410285|ref|XP_001506054.1| PREDICTED: simila ( 433) 2860 545.7 8.4e-153 gi|1710719|sp|P51128.1|RXRA_XENLA Retinoic acid re ( 488) 2765 528.0 2.1e-147 gi|109109847|ref|XP_001118265.1| PREDICTED: retino ( 450) 2731 521.6 1.6e-145 gi|194671811|ref|XP_887036.3| PREDICTED: retinoid ( 404) 2671 510.3 3.6e-142 gi|189533916|ref|XP_001923873.1| PREDICTED: RXRalp ( 458) 2618 500.4 3.8e-139 gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full ( 430) 2594 495.9 8.2e-138 gi|73967638|ref|XP_858806.1| PREDICTED: similar to ( 399) 2582 493.7 3.7e-137 gi|73967650|ref|XP_859036.1| PREDICTED: similar to ( 386) 2536 485.0 1.4e-134 gi|73967642|ref|XP_858879.1| PREDICTED: similar to ( 394) 2536 485.0 1.4e-134 gi|73967644|ref|XP_858917.1| PREDICTED: similar to ( 386) 2529 483.7 3.5e-134 gi|73967646|ref|XP_858958.1| PREDICTED: similar to ( 387) 2529 483.7 3.5e-134 gi|73967648|ref|XP_859001.1| PREDICTED: similar to ( 385) 2522 482.4 8.7e-134 gi|73967630|ref|XP_858650.1| PREDICTED: similar to ( 387) 2501 478.5 1.3e-132 gi|83638436|gb|ABC33911.1| retinoid X receptor alp ( 374) 2469 472.5 8.3e-131 gi|193785958|dbj|BAG54745.1| unnamed protein produ ( 365) 2449 468.7 1.1e-129 gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio ( 365) 2322 444.9 1.6e-122 gi|1583309|prf||2120366D retinoid X receptor:ISOTY ( 391) 2279 436.9 4.4e-120 gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full= ( 441) 2274 436.0 9.2e-120 gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full= ( 379) 2273 435.8 9.3e-120 gi|1046295|gb|AAC59720.1| retinoid X receptor alph ( 441) 2271 435.5 1.4e-119 gi|197941308|gb|ACH78358.1| retinoid X receptor ga ( 451) 2260 433.4 5.7e-119 gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full= ( 452) 2218 425.5 1.3e-116 gi|126306269|ref|XP_001370409.1| PREDICTED: hypoth ( 467) 2213 424.6 2.6e-116 gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Ret ( 467) 2199 422.0 1.6e-115 gi|224058878|ref|XP_002190441.1| PREDICTED: retino ( 468) 2198 421.8 1.8e-115 gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=R ( 463) 2172 416.9 5.3e-114 gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Re ( 463) 2169 416.4 7.9e-114 gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Re ( 463) 2169 416.4 7.9e-114 gi|109019325|ref|XP_001085084.1| PREDICTED: retino ( 463) 2168 416.2 9e-114 gi|113197752|gb|AAI21596.1| LOC779621 protein [Xen ( 452) 2165 415.6 1.3e-113 gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Re ( 463) 2165 415.6 1.3e-113 >>gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoi (467 aa) initn: 3160 init1: 3160 opt: 3160 Z-score: 3202.7 bits: 601.9 E(): 1.1e-169 Smith-Waterman score: 3160; 100.000% identity (100.000% similar) in 467 aa overlap (5-471:1-467) 10 20 30 40 50 60 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 MDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI 10 20 30 40 50 70 80 90 100 110 120 mFLJ00 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL 60 70 80 90 100 110 130 140 150 160 170 180 mFLJ00 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 120 130 140 150 160 170 190 200 210 220 230 240 mFLJ00 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP 180 190 200 210 220 230 250 260 270 280 290 300 mFLJ00 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE 240 250 260 270 280 290 310 320 330 340 350 360 mFLJ00 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT 300 310 320 330 340 350 370 380 390 400 410 420 mFLJ00 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ 360 370 380 390 400 410 430 440 450 460 470 mFLJ00 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT 420 430 440 450 460 >>gi|74194825|dbj|BAE26004.1| unnamed protein product [M (467 aa) initn: 3148 init1: 3148 opt: 3148 Z-score: 3190.6 bits: 599.7 E(): 5.2e-169 Smith-Waterman score: 3148; 99.786% identity (99.786% similar) in 467 aa overlap (5-471:1-467) 10 20 30 40 50 60 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 MDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI 10 20 30 40 50 70 80 90 100 110 120 mFLJ00 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|741 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLVFGTGSPQLNSPMNPVSSTEDIKPPL 60 70 80 90 100 110 130 140 150 160 170 180 mFLJ00 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 120 130 140 150 160 170 190 200 210 220 230 240 mFLJ00 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP 180 190 200 210 220 230 250 260 270 280 290 300 mFLJ00 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE 240 250 260 270 280 290 310 320 330 340 350 360 mFLJ00 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT 300 310 320 330 340 350 370 380 390 400 410 420 mFLJ00 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ 360 370 380 390 400 410 430 440 450 460 470 mFLJ00 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT 420 430 440 450 460 >>gi|110781215|emb|CAL25727.1| retinoid X receptor alpha (467 aa) initn: 3236 init1: 3134 opt: 3134 Z-score: 3176.4 bits: 597.1 E(): 3.2e-168 Smith-Waterman score: 3134; 98.715% identity (100.000% similar) in 467 aa overlap (5-471:1-467) 10 20 30 40 50 60 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI ::::::::::::::::::::.:::::::::.::::::::::.:::::::::::::: gi|110 MDTKHFLPLDFSTQVNSSSLSSPTGRGSMAAPSLHPSLGPGLGSPLGSPGQLHSPI 10 20 30 40 50 70 80 90 100 110 120 mFLJ00 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|110 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSSEDIKPPL 60 70 80 90 100 110 130 140 150 160 170 180 mFLJ00 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|110 GLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 120 130 140 150 160 170 190 200 210 220 230 240 mFLJ00 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP 180 190 200 210 220 230 250 260 270 280 290 300 mFLJ00 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE 240 250 260 270 280 290 310 320 330 340 350 360 mFLJ00 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT 300 310 320 330 340 350 370 380 390 400 410 420 mFLJ00 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ 360 370 380 390 400 410 430 440 450 460 470 mFLJ00 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT :::::::::::::::::::::::::::::::::::::::::::::::::.: gi|110 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQTT 420 430 440 450 460 >>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic (467 aa) initn: 3225 init1: 3123 opt: 3123 Z-score: 3165.3 bits: 595.0 E(): 1.3e-167 Smith-Waterman score: 3123; 98.501% identity (99.786% similar) in 467 aa overlap (5-471:1-467) 10 20 30 40 50 60 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI ::::::::::::::::::::.:::::::::.::::::::::.:::::::::::::: gi|464 MDTKHFLPLDFSTQVNSSSLSSPTGRGSMAAPSLHPSLGPGLGSPLGSPGQLHSPI 10 20 30 40 50 70 80 90 100 110 120 mFLJ00 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL :::::::::::::::::::::::::::::::::::: :::::::::::::::.::::::: gi|464 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFETGSPQLNSPMNPVSSSEDIKPPL 60 70 80 90 100 110 130 140 150 160 170 180 mFLJ00 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|464 GLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 120 130 140 150 160 170 190 200 210 220 230 240 mFLJ00 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP 180 190 200 210 220 230 250 260 270 280 290 300 mFLJ00 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE 240 250 260 270 280 290 310 320 330 340 350 360 mFLJ00 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT 300 310 320 330 340 350 370 380 390 400 410 420 mFLJ00 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|464 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ 360 370 380 390 400 410 430 440 450 460 470 mFLJ00 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT :::::::::::::::::::::::::::::::::::::::::::::::::.: gi|464 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQTT 420 430 440 450 460 >>gi|149249157|ref|XP_001477381.1| PREDICTED: similar to (629 aa) initn: 3096 init1: 3096 opt: 3096 Z-score: 3136.3 bits: 590.1 E(): 5.5e-166 Smith-Waterman score: 3096; 100.000% identity (100.000% similar) in 458 aa overlap (14-471:172-629) 10 20 30 40 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLG :::::::::::::::::::::::::::::: gi|149 SPALTMRLRLLASFSGGGLAWRAGDHRWLADFSTQVNSSSLNSPTGRGSMAVPSLHPSLG 150 160 170 180 190 200 50 60 70 80 90 100 mFLJ00 PGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQL 210 220 230 240 250 260 110 120 130 140 150 160 mFLJ00 NSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEG 270 280 290 300 310 320 170 180 190 200 210 220 mFLJ00 CKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 CKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKD 330 340 350 360 370 380 230 240 250 260 270 280 mFLJ00 RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADK 390 400 410 420 430 440 290 300 310 320 330 340 mFLJ00 QLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 QLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 450 460 470 480 490 500 350 360 370 380 390 400 mFLJ00 NSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALRE 510 520 530 540 550 560 410 420 430 440 450 460 mFLJ00 KVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 570 580 590 600 610 620 470 mFLJ00 LEAPHQAT :::::::: gi|149 LEAPHQAT >>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha (457 aa) initn: 3088 init1: 3088 opt: 3088 Z-score: 3130.0 bits: 588.5 E(): 1.2e-165 Smith-Waterman score: 3088; 100.000% identity (100.000% similar) in 457 aa overlap (15-471:1-457) 10 20 30 40 50 60 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI :::::::::::::::::::::::::::::::::::::::::::::: gi|148 FSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI 10 20 30 40 70 80 90 100 110 120 mFLJ00 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL 50 60 70 80 90 100 130 140 150 160 170 180 mFLJ00 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 110 120 130 140 150 160 190 200 210 220 230 240 mFLJ00 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP 170 180 190 200 210 220 250 260 270 280 290 300 mFLJ00 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE 230 240 250 260 270 280 310 320 330 340 350 360 mFLJ00 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT 290 300 310 320 330 340 370 380 390 400 410 420 mFLJ00 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ 350 360 370 380 390 400 430 440 450 460 470 mFLJ00 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT 410 420 430 440 450 >>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens] (516 aa) initn: 3078 init1: 2861 opt: 3082 Z-score: 3123.2 bits: 587.4 E(): 2.9e-165 Smith-Waterman score: 3082; 97.452% identity (98.726% similar) in 471 aa overlap (1-471:51-516) 10 20 30 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGR :::::::::::::::::::::: :.::::: gi|396 RRLPAARARAGRAGGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSS-LTSPTGR 30 40 50 60 70 40 50 60 70 80 90 mFLJ00 GSMAVPSLHPSLGPGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPT ::::.::::::::::: :::::::::::::::::::::::::::::::::::::::: gi|396 GSMAAPSLHPSLGPGI----GSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPT 80 90 100 110 120 130 100 110 120 130 140 150 mFLJ00 TPTLGFGTGSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDR ::::::.::::::.::::::::.::::::::::::::::::::::::::::::::::::: gi|396 TPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDR 140 150 160 170 180 190 160 170 180 190 200 210 mFLJ00 SSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 SSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMK 200 210 220 230 240 250 220 230 240 250 260 270 mFLJ00 REAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSP ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|396 REAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSP 260 270 280 290 300 310 280 290 300 310 320 330 mFLJ00 NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVK 320 330 340 350 360 370 340 350 360 370 380 390 mFLJ00 DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 380 390 400 410 420 430 400 410 420 430 440 450 mFLJ00 GLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 GLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 440 450 460 470 480 490 460 470 mFLJ00 IGDTPIDTFLMEMLEAPHQAT ::::::::::::::::::: : gi|396 IGDTPIDTFLMEMLEAPHQMT 500 510 >>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning (472 aa) initn: 3096 init1: 2861 opt: 3063 Z-score: 3104.5 bits: 583.8 E(): 3.2e-164 Smith-Waterman score: 3063; 97.222% identity (98.718% similar) in 468 aa overlap (4-471:10-472) 10 20 30 40 50 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPG :.::::::::::::::::: :.:::::::::.:::::::::::::: : gi|993 MEQKLISEEDLDTKHFLPLDFSTQVNSS-LTSPTGRGSMAAPSLHPSLGPGIGSP----G 10 20 30 40 50 60 70 80 90 100 110 mFLJ00 QLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTE ::::::::::::::::::::::::::::::::::::::::::.::::::.::::::::.: gi|993 QLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSE 60 70 80 90 100 110 120 130 140 150 160 170 mFLJ00 DIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 DIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRK 120 130 140 150 160 170 180 190 200 210 220 230 mFLJ00 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSS 180 190 200 210 220 230 240 250 260 270 280 290 mFLJ00 ANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKR ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 ANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKR 240 250 260 270 280 290 300 310 320 330 340 350 mFLJ00 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAI 300 310 320 330 340 350 360 370 380 390 400 410 mFLJ00 FDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|993 FDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCK 360 370 380 390 400 410 420 430 440 450 460 470 mFLJ00 HKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT ::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|993 HKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT 420 430 440 450 460 470 >>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [ (479 aa) initn: 3096 init1: 2861 opt: 3063 Z-score: 3104.4 bits: 583.8 E(): 3.3e-164 Smith-Waterman score: 3063; 97.222% identity (98.718% similar) in 468 aa overlap (4-471:17-479) 10 20 30 40 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIG :.::::::::::::::::: :.:::::::::.:::::::::::: gi|400 MKNTIDNMEQKLISEEDLDTKHFLPLDFSTQVNSS-LTSPTGRGSMAAPSLHPSLGPGIG 10 20 30 40 50 50 60 70 80 90 100 mFLJ00 SPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPM :: :::::::::::::::::::::::::::::::::::::::::::.::::::.::: gi|400 SP----GQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPM 60 70 80 90 100 110 110 120 130 140 150 160 mFLJ00 NPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGF :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 NPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGF 120 130 140 150 160 170 170 180 190 200 210 220 mFLJ00 FKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 FKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNEN 180 190 200 210 220 230 230 240 250 260 270 280 mFLJ00 EVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFT :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|400 EVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFT 240 250 260 270 280 290 290 300 310 320 330 340 mFLJ00 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 300 310 320 330 340 350 350 360 370 380 390 400 mFLJ00 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 360 370 380 390 400 410 410 420 430 440 450 460 mFLJ00 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 420 430 440 450 460 470 470 mFLJ00 HQAT :: : gi|400 HQMT >>gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoi (462 aa) initn: 3096 init1: 2861 opt: 3059 Z-score: 3100.6 bits: 583.0 E(): 5.3e-164 Smith-Waterman score: 3059; 97.430% identity (98.715% similar) in 467 aa overlap (5-471:1-462) 10 20 30 40 50 60 mFLJ00 LVADMDTKHFLPLDFSTQVNSSSLNSPTGRGSMAVPSLHPSLGPGIGSPLGSPGQLHSPI :::::::::::::::::: :.:::::::::.:::::::::::::: ::::::: gi|133 MDTKHFLPLDFSTQVNSS-LTSPTGRGSMAAPSLHPSLGPGIGSP----GQLHSPI 10 20 30 40 50 70 80 90 100 110 120 mFLJ00 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSTEDIKPPL ::::::::::::::::::::::::::::::::::::.::::::.::::::::.::::::: gi|133 STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 60 70 80 90 100 110 130 140 150 160 170 180 mFLJ00 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 GLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 120 130 140 150 160 170 190 200 210 220 230 240 mFLJ00 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 RDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP 180 190 200 210 220 230 250 260 270 280 290 300 mFLJ00 VEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 VERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE 240 250 260 270 280 290 310 320 330 340 350 360 mFLJ00 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLT 300 310 320 330 340 350 370 380 390 400 410 420 mFLJ00 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ 360 370 380 390 400 410 430 440 450 460 470 mFLJ00 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQAT ::::::::::::::::::::::::::::::::::::::::::::::::: : gi|133 PGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT 420 430 440 450 460 471 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 05:43:57 2009 done: Fri Mar 13 05:50:48 2009 Total Scan time: 925.030 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]