FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1390.ptfa, 378 aa
 vs ./tmplib.26680 library

1768639 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.7439+/-0.0042; mu= 9.7015+/- 0.279
 mean_var=113.5421+/-27.125, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.1204

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1164  ( 623 res)   mpj05058                   ( 623) 1401  254 1.9e-68


>>mKIAA1164  ( 623 res)   mpj05058                        (623 aa)
 initn: 1275 init1: 1275 opt: 1401  Z-score: 1321.0  bits: 253.9 E(): 1.9e-68
Smith-Waterman score: 1401;  58.421% identity (62.890% ungapped) in 380 aa overlap (1-362:227-597)

                                             10            20      
mKIAA1                               AEVCSRPQELPQ----SPRIQQPELDFYCV
                                     : .:.. .: :     . . . :  . : .
mKIAA1 PSSSEFNSEEGAETRVPEDVEEGAAGPPRAAPLCKEEEEDPAQVLAASKERFPGQSVYHI
        200       210       220       230       240       250      

         30        40        50        60        70        80      
mKIAA1 KWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLS
       ::: :: : ::::::. :::::::::.:.:.: ::::.::. :.::...:. .::. .: 
mKIAA1 KWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKFPPMMEIITAEQLMEYLGDYMLE
        260       270       280       290       300       310      

         90       100       110       120       130       140      
mKIAA1 IKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPL
        ::.: ::  ..:..::..:::..: :: ::::::::::::  ::::::: .:::: :::
mKIAA1 AKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPL
        320       330       340       350       360       370      

        150       160       170       180       190       200      
mKIAA1 YHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTY
       :::::::::  . :.:::. ::::::::::.::.:..:.::.::.::::::..::.::::
mKIAA1 YHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSQLVSEGFVAEQFLNNTATQLTY
        380       390       400       410       420       430      

        210       220       230       240       250       260      
mKIAA1 HGLCELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGD
       :::::::... : :: :::::::::::::.:..::::::::::: ::..:::::::::::
mKIAA1 HGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKIVWESLHNVDGD
        440       450       460       470       480       490      

        270       280       290       300       310             320
mKIAA1 SCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQDYLIALSLQQQQQPQGT------LG
       . ::::.:::          .:      .: :.:::::.::::::.:: :         :
mKIAA1 GNFCDSEFHLRPPSDPETVYKG------QQDQIDQDYLMALSLQQEQQSQEINWEQIPEG
        500       510             520       530       540       550

              330              340        350       360       370  
mKIAA1 LSDLELAQQLQQEE-------YQQQQAVQPV-RTRAPSPQGRGATSGRPAGERRQRSKTE
       .::::::..::.::       ::.:. .: :  : .:: :   : .:.::          
mKIAA1 ISDLELAKKLQEEEDRRASQYYQEQEQAQAVVTTTTPSTQ---AQQGQPAQASPSSIKQP
              560       570       580       590          600       

                       
mKIAA1 SDCVLL          
                       
mKIAA1 GNSERKRKEPREKDKE
       610       620   




378 residues in 1 query   sequences
1768639 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:43:21 2006 done: Mon Mar 27 10:43:21 2006
 Scan time:  0.610 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]