FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1374.ptfa, 446 aa vs ./tmplib.26680 library 1768571 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.7510+/-0.00385; mu= 18.7033+/- 0.258 mean_var=77.7607+/-18.192, 0's: 0 Z-trim: 11 B-trim: 5 in 1/35 Lambda= 0.1454 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1942 ( 431 res) mej02524 ( 431) 159 43 4.6e-05 mKIAA4188 ( 402 res) mbh00640 ( 402) 148 41 0.00022 mKIAA1261 ( 729 res) mfj34130 ( 729) 147 41 0.00035 mKIAA1547 ( 897 res) mbg07188 ( 897) 144 40 0.00061 mKIAA4167 ( 342 res) mpj04828 ( 342) 135 38 0.0013 mKIAA1924 ( 1782 res) mpf00636 (1782) 139 40 0.0018 >>mKIAA1942 ( 431 res) mej02524 (431 aa) initn: 152 init1: 99 opt: 159 Z-score: 183.3 bits: 43.0 E(): 4.6e-05 Smith-Waterman score: 174; 23.936% identity (27.108% ungapped) in 188 aa overlap (108-277:194-377) 80 90 100 110 120 130 mKIAA1 IKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGE-DGQ : .: : .: :. . . . .:. . . mKIAA1 ALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKN 170 180 190 200 210 220 140 150 160 170 180 mKIAA1 VKIWSKT-----GMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQ----PNAK :..:. : .. . .. . : .. :.: . :. . . . :. . :. mKIAA1 VHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKA 230 240 250 260 270 280 190 200 210 220 230 240 mKIAA1 VL--QWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWD----SYGRVLYGSQPHEHPITS . :::: . ..:. . ..::.:.: :::: . : . . : :.:: mKIAA1 CMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTS 290 300 310 320 330 340 250 260 270 280 290 mKIAA1 VAWAP-DGELFAVGSFHTLRLCDKTGWSYALEK-PNTGSIFNIAWSIDGTQIAGACGNGH : : : :. .::... . . : :. :.:. :..: mKIAA1 VEWHPQDSGVFAASGADN----QITQWDLAVERDPESGETETDPGLAALPQQLLFVHQGE 350 360 370 380 390 300 310 320 330 340 350 mKIAA1 VVFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTS mKIAA1 TDLKELHWHPQCPGVLISTALSGFTVFRTISV 400 410 420 430 >>mKIAA4188 ( 402 res) mbh00640 (402 aa) initn: 47 init1: 47 opt: 148 Z-score: 171.1 bits: 40.7 E(): 0.00022 Smith-Waterman score: 148; 25.899% identity (28.346% ungapped) in 139 aa overlap (124-254:173-307) 100 110 120 130 140 150 mKIAA1 GKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQVKIW---SKTGMLRSTL .: .:.. :: . ..:: . : ... : mKIAA4 DVGQPGSKTPVAQLDCLNRDNYIRSCKLLPDGQSLIVGGEASTLSIWDLAAPTPRIKAEL 150 160 170 180 190 200 160 170 180 190 200 mKIAA1 AQQGTPVYSVAWGPDSEKVLYT--AGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVND .... :..: .::. :: .. . .... :: .: : :...: .: .. . mKIAA4 TSSAPACYALAVSPDA-KVCFSCCSDGNIVVWDLQNQAMVRQFQGHTDGASCIDISDYGT 210 220 230 240 250 260 210 220 230 240 250 260 mKIAA1 LILSAGEDCKYKVWD-SYGRVLYGSQPHEH--PITSVAWAPDGELFAVGSFHTLRLCDKT . ..: : . :: :: : : :. : :.. :. . .::: mKIAA4 RLWTGGLDNTVRCWDLREGRQL---QQHDFSSQIFSLGHCPNQDWLAVGMESSHVEVLHV 270 280 290 300 310 270 280 290 300 310 320 mKIAA1 GWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTM mKIAA4 RKPEKYQLRLHESCVLSLKFASCGRWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 320 330 340 350 360 370 >>mKIAA1261 ( 729 res) mfj34130 (729 aa) initn: 95 init1: 63 opt: 147 Z-score: 167.5 bits: 40.9 E(): 0.00035 Smith-Waterman score: 147; 26.619% identity (29.134% ungapped) in 139 aa overlap (124-254:500-634) 100 110 120 130 140 150 mKIAA1 GKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQVKIW---SKTGMLRSTL .: .:.. :: . ..:: . : ... : mKIAA1 DISHPGNKSPVSQLDCLNRDNYIRSCRLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL 470 480 490 500 510 520 160 170 180 190 200 mKIAA1 AQQGTPVYSVAWGPDSEKVLYT--AGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVND .... :..: .::: :: .. . .. . :. .. : :...: .: .. . mKIAA1 TSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 530 540 550 560 570 580 210 220 230 240 250 260 mKIAA1 LILSAGEDCKYKVWD-SYGRVLYGSQPHEH--PITSVAWAPDGELFAVGSFHTLRLCDKT . ..: : . :: :: : : :. : :... : :: .::: mKIAA1 KLWTGGLDNTVRSWDLREGRQL---QQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLHV 590 600 610 620 630 640 270 280 290 300 310 320 mKIAA1 GWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTM mKIAA1 TKPDKYQLHLHESCVLSLKFAHCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 650 660 670 680 690 700 >>mKIAA1547 ( 897 res) mbg07188 (897 aa) initn: 94 init1: 63 opt: 144 Z-score: 163.2 bits: 40.4 E(): 0.00061 Smith-Waterman score: 144; 26.619% identity (29.134% ungapped) in 139 aa overlap (124-254:668-802) 100 110 120 130 140 150 mKIAA1 GKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQVKIW---SKTGMLRSTL .: .:.. :: . . :: : : ... : mKIAA1 DISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAEL 640 650 660 670 680 690 160 170 180 190 200 mKIAA1 AQQGTPVYSVAWGPDSEKVLYT--AGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVND .... :..: .::. :: .. . .. . :. .. : :...: .: . . mKIAA1 TSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGT 700 710 720 730 740 750 210 220 230 240 250 260 mKIAA1 LILSAGEDCKYKVWD-SYGRVLYGSQPHEH--PITSVAWAPDGELFAVGSFHTLRLCDKT . ..: : . :: :: : : :. : :... : :: .::: mKIAA1 KLWTGGLDNTVRSWDLREGRQL---QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHH 760 770 780 790 800 810 270 280 290 300 310 320 mKIAA1 GWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTM mKIAA1 TKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 820 830 840 850 860 870 >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 157 init1: 85 opt: 135 Z-score: 157.1 bits: 37.9 E(): 0.0013 Smith-Waterman score: 204; 24.516% identity (25.000% ungapped) in 155 aa overlap (108-259:48-202) 80 90 100 110 120 130 mKIAA1 IKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQV .. .: .:. . ... .: :.. . :. . mKIAA4 EHLPAERAQSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALI 20 30 40 50 60 70 140 150 160 170 180 190 mKIAA1 KIWSK-TGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAG-KQLIIKPLQPNAKVLQWKAHD ::. : ..:: .. . .:::. :: ... .. : : . .. . . :.:. mKIAA4 IIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHS 80 90 100 110 120 130 200 210 220 230 240 250 mKIAA1 GIILKVDWNSVNDLILSAGEDCKYKVWD-SYGRVLYGSQPHEHPITSVAWAPDGELFAVG ... :.: ..::.:.. : . :.:. . :. : . : ::..: . .: :.. : mKIAA4 DFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSG 140 150 160 170 180 190 260 270 280 290 300 310 mKIAA1 SFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKN :. : mKIAA4 SYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCL 200 210 220 230 240 250 >>mKIAA1924 ( 1782 res) mpf00636 (1782 aa) initn: 167 init1: 79 opt: 139 Z-score: 154.6 bits: 39.8 E(): 0.0018 Smith-Waterman score: 139; 24.044% identity (25.287% ungapped) in 183 aa overlap (126-301:599-779) 100 110 120 130 140 150 mKIAA1 FHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVG-EDGQVKIWSKTGMLRSTL--AQ :: .:: ::: ...: . :.: :. mKIAA1 LPARSPGAPLAEKQNFSVGSGIAISSLSVSTATCAVGSEDGYLRLWPLD--FSSVLLEAE 570 580 590 600 610 620 160 170 180 190 200 210 mKIAA1 QGTPVYSVAWGPDSEKVLYTA-GKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLIL . :: ::...::. .:: :. . .: . . .. ..: . .: .. . . mKIAA1 HDGPVSSVSFSPDGLRVLSTTTSGHLGFLDVPSREYTVLARSHMAPVLALSTEPNRGQMA 630 640 650 660 670 680 220 230 240 250 260 mKIAA1 SAGEDCKYKVWD-SYGRVLYGSQPHEHPITSVAWAPDGELFAVG-SFHTLRLCDKTGWSY ... : ..:: . . :: . : .::. : : : : ..: . . . mKIAA1 TVSLDHTVRIWDLATLQQLYDFSSSEDTPCAVAFHPTMPNFFCGFSSGAVRSFSLESSGV 690 700 710 720 730 740 270 280 290 300 310 320 mKIAA1 ALEKP-NTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTMQVR .:. . :.: ... ..:: . ..:..: .: mKIAA1 LVEHTRHRGAITSLVITLDGRFLFSSCSQGSLVQYSCADSQCCVLRVAANMVCQDGRPNP 750 760 770 780 790 800 330 340 350 360 370 380 mKIAA1 NVLNDAVDLLEFRDRVIKASLNHAHLVVSTSLQCYVFSTKNWNTPLIFDLKEGTVSLILQ mKIAA1 NILAVSGDSCRLAFVGPSKCMVTIVESASLDELLRVDVSTLNLASNHLDWAVAICFSPGN 810 820 830 840 850 860 446 residues in 1 query sequences 1768571 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:42:41 2006 done: Mon Mar 27 10:42:42 2006 Scan time: 0.660 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]