# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpj01605.fasta.nr -Q ../query/mKIAA1374.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1374, 446 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7913033 sequences Expectation_n fit: rho(ln(x))= 5.1418+/-0.000184; mu= 10.8338+/- 0.010 mean_var=69.2568+/-13.654, 0's: 39 Z-trim: 76 B-trim: 779 in 2/64 Lambda= 0.154114 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|26334999|dbj|BAC31200.1| unnamed protein produc ( 751) 2952 665.6 1.2e-188 gi|61217633|sp|Q8K057.1|IFT80_MOUSE RecName: Full= ( 777) 2952 665.6 1.2e-188 gi|61216968|sp|Q66HB3.1|IFT80_RAT RecName: Full=In ( 777) 2938 662.5 1e-187 gi|148683554|gb|EDL15501.1| intraflagellar transpo ( 437) 2890 651.6 1.1e-184 gi|194041161|ref|XP_001927426.1| PREDICTED: simila ( 700) 2883 650.2 4.6e-184 gi|126338436|ref|XP_001370716.1| PREDICTED: simila ( 777) 2878 649.1 1.1e-183 gi|148744058|gb|AAI42311.1| IFT80 protein [Bos tau ( 777) 2866 646.4 6.9e-183 gi|75516516|gb|AAI01495.1| Intraflagellar transpor ( 777) 2862 645.6 1.3e-182 gi|149731034|ref|XP_001489193.1| PREDICTED: intraf ( 777) 2860 645.1 1.7e-182 gi|61217653|sp|Q9P2H3.2|IFT80_HUMAN RecName: Full= ( 777) 2852 643.3 6e-182 gi|74003689|ref|XP_545256.2| PREDICTED: similar to ( 801) 2825 637.3 3.9e-180 gi|109048580|ref|XP_001093524.1| PREDICTED: simila ( 768) 2796 630.9 3.3e-178 gi|118095329|ref|XP_422817.2| PREDICTED: similar t ( 778) 2689 607.1 4.9e-171 gi|224060953|ref|XP_002194885.1| PREDICTED: intraf ( 778) 2604 588.2 2.4e-165 gi|89269965|emb|CAJ81283.1| WD repeat domain 56 [X ( 779) 2571 580.9 3.8e-163 gi|56269722|gb|AAH86735.1| Intraflagellar transpor ( 777) 2526 570.8 3.9e-160 gi|210129741|gb|EEA77414.1| hypothetical protein B ( 771) 2301 520.8 4.5e-145 gi|210089968|gb|EEA38258.1| hypothetical protein B ( 777) 2301 520.8 4.5e-145 gi|156219763|gb|EDO40640.1| predicted protein [Nem ( 771) 2282 516.6 8.4e-144 gi|115686362|ref|XP_797867.2| PREDICTED: similar t ( 760) 2180 493.9 5.6e-137 gi|190588452|gb|EDV28474.1| hypothetical protein T ( 773) 2065 468.3 2.8e-129 gi|148683553|gb|EDL15500.1| intraflagellar transpo ( 640) 2034 461.4 2.9e-127 gi|149048337|gb|EDM00913.1| intraflagellar transpo ( 640) 2028 460.1 7.3e-127 gi|119599049|gb|EAW78643.1| intraflagellar transpo ( 640) 1968 446.7 7.5e-123 gi|198428917|ref|XP_002119597.1| PREDICTED: simila ( 762) 1905 432.8 1.4e-118 gi|15489456|gb|AAH13814.1| Ift80 protein [Mus musc ( 601) 1780 404.9 2.7e-110 gi|212508542|gb|EEB12190.1| predicted protein [Ped ( 745) 1735 395.0 3.3e-107 gi|91083025|ref|XP_974697.1| PREDICTED: similar to ( 749) 1658 377.8 4.8e-102 gi|148613343|gb|ABQ96217.1| intraflagellar transpo ( 765) 1554 354.7 4.4e-95 gi|156547201|ref|XP_001604302.1| PREDICTED: simila ( 799) 1541 351.9 3.4e-94 gi|110755416|ref|XP_624405.2| PREDICTED: similar t ( 729) 1509 344.7 4.4e-92 gi|158594584|gb|EDP33168.1| RIKEN cDNA 4921524P20, ( 754) 1498 342.3 2.5e-91 gi|215492879|gb|EEC02520.1| G-beta-repeat protein, ( 636) 1473 336.7 1e-89 gi|47224981|emb|CAF97396.1| unnamed protein produc ( 268) 1422 325.1 1.3e-86 gi|124419103|emb|CAK84051.1| unnamed protein produ ( 751) 1372 314.3 6.6e-83 gi|187028517|emb|CAP32414.1| C. briggsae CBR-CHE-2 ( 761) 1360 311.6 4.3e-82 gi|14574192|gb|AAK68383.1|AC006635_1 Abnormal chem ( 760) 1359 311.4 5e-82 gi|146142981|gb|EAR82753.2| hypothetical protein T ( 774) 1322 303.2 1.5e-79 gi|167879837|gb|EDS43220.1| Oseg5 [Culex quinquefa ( 751) 1320 302.7 2e-79 gi|162681532|gb|EDQ67958.1| intraflagellar transpo ( 658) 1287 295.3 2.9e-77 gi|27693505|gb|AAH42027.1| IFT80 protein [Homo sap ( 536) 1257 288.6 2.5e-75 gi|193913894|gb|EDW12761.1| GI17850 [Drosophila mo ( 782) 1216 279.6 1.9e-72 gi|194107182|gb|EDW29225.1| GL19588 [Drosophila pe ( 777) 1212 278.7 3.5e-72 gi|198138597|gb|EAL33916.2| GA21709 [Drosophila ps ( 777) 1212 278.7 3.5e-72 gi|194161502|gb|EDW76403.1| GK14679 [Drosophila wi ( 800) 1199 275.8 2.7e-71 gi|190657291|gb|EDV54504.1| GG21545 [Drosophila er ( 775) 1190 273.8 1e-70 gi|190617888|gb|EDV33412.1| GF24296 [Drosophila an ( 776) 1190 273.8 1e-70 gi|220902085|gb|AAF53931.2| Oseg5 [Drosophila mela ( 775) 1187 273.1 1.6e-70 gi|194148523|gb|EDW64221.1| GJ17345 [Drosophila vi ( 784) 1183 272.2 3.1e-70 gi|194124350|gb|EDW46393.1| GM23300 [Drosophila se ( 775) 1182 272.0 3.6e-70 >>gi|26334999|dbj|BAC31200.1| unnamed protein product [M (751 aa) initn: 2952 init1: 2952 opt: 2952 Z-score: 3543.3 bits: 665.6 E(): 1.2e-188 Smith-Waterman score: 2952; 100.000% identity (100.000% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::::::::: gi|263 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEIALDQKGL 420 430 440 450 460 470 >>gi|61217633|sp|Q8K057.1|IFT80_MOUSE RecName: Full=Intr (777 aa) initn: 2952 init1: 2952 opt: 2952 Z-score: 3543.1 bits: 665.6 E(): 1.2e-188 Smith-Waterman score: 2952; 100.000% identity (100.000% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::::::::: gi|612 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEIALDQKGL 420 430 440 450 460 470 >>gi|61216968|sp|Q66HB3.1|IFT80_RAT RecName: Full=Intraf (777 aa) initn: 2938 init1: 2938 opt: 2938 Z-score: 3526.2 bits: 662.5 E(): 1e-187 Smith-Waterman score: 2938; 99.543% identity (99.543% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|612 MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|612 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGIPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::::::::: gi|612 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEVALDQKGL 420 430 440 450 460 470 >>gi|148683554|gb|EDL15501.1| intraflagellar transport 8 (437 aa) initn: 2890 init1: 2890 opt: 2890 Z-score: 3472.1 bits: 651.6 E(): 1.1e-184 Smith-Waterman score: 2890; 98.391% identity (99.310% similar) in 435 aa overlap (12-446:3-437) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL .: .. .::::::::::::::::::::::::::::::::::::::::: gi|148 RYLSQRNQTSHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK :::::::::::::::::::::::::: gi|148 TDILNAQTVSLSNDTIAIKDKADEKK 420 430 >>gi|194041161|ref|XP_001927426.1| PREDICTED: similar to (700 aa) initn: 2883 init1: 2883 opt: 2883 Z-score: 3460.8 bits: 650.2 E(): 4.6e-184 Smith-Waterman score: 2883; 97.032% identity (98.858% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::: :::::::::::::::::::::::::::::::::::::::: :::: gi|194 MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSQIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|194 PDDIYPIDLHWFPKSLGTKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|194 WNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT ::::::::::::::::::::::::::::::::::::::::::::::: ::.::::::::: gi|194 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYSSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|194 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQVAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL :::::.::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|194 VFAHVIEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::: ::::::::::::::::::::::::::::::::::::.::::::.:.::::::: gi|194 QCYVFSIKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLYSYEGRFLSAPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::::::::: gi|194 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEILEIALDQKGL 420 430 440 450 460 470 >>gi|126338436|ref|XP_001370716.1| PREDICTED: similar to (777 aa) initn: 2878 init1: 2878 opt: 2878 Z-score: 3454.1 bits: 649.1 E(): 1.1e-183 Smith-Waterman score: 2878; 96.575% identity (99.543% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::: .::::::::::::::::::::::::::::::::::::::: :::: gi|126 MRLKISLLREPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSQIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR :::.:::::::::::.:.:::::::::::::::::::::::::::::::::::::::::: gi|126 PDDMYPIDLHWFPKSIGVKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 WNYEGTALITVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT :::::::.:::::::::::::::::::::::::::::::::::::::.::.::::::::: gi|126 PLQPNAKILQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRLLYSSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|126 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGQV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL :::::::::::::::.::::::::::::::::::::::::::::::::::..:::::::: gi|126 VFAHVVEQRWEWKNFEVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNYGHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|126 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLYSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::::::::: gi|126 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKILSHKNEILEIALDQKGL 420 430 440 450 460 470 >>gi|148744058|gb|AAI42311.1| IFT80 protein [Bos taurus] (777 aa) initn: 2866 init1: 2866 opt: 2866 Z-score: 3439.7 bits: 646.4 E(): 6.9e-183 Smith-Waterman score: 2866; 96.804% identity (98.858% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::: ::::::::::::::::::::::::::::::::::::.::: :::: gi|148 MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTGETSQIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR ::::::::::::::::::::::::: :::::::::::::::::::::::::: ::::::: gi|148 PDDIYPIDLHWFPKSLGIKKQTQAEIFVLTSSDGKFHLISKLGRVEKSVEAHSGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK ::::::::::::::::.::::::::::::::.:::::::::::::::::::::::::::: gi|148 WNYEGTALVTVGEDGQIKIWSKTGMLRSTLAHQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT :::::::.::::::::::::::::::::::::::::::::::::::: ::.::::::::: gi|148 PLQPNAKILQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYSSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|148 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSVDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|148 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::::::::::::::::::::::::::::::::.::::::.::::::::: gi|148 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLYSYEGRFLSSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::::::::: gi|148 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPMGDGKFLSHKNEVLEIALDQKGL 420 430 440 450 460 470 >>gi|75516516|gb|AAI01495.1| Intraflagellar transport 80 (777 aa) initn: 2862 init1: 2862 opt: 2862 Z-score: 3434.9 bits: 645.6 E(): 1.3e-182 Smith-Waterman score: 2862; 96.347% identity (99.315% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::: :::::::::::::::::::::::::::::::::::::::. :::: gi|755 MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETTQIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR ::::::::.::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|755 PDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|755 WNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT ::::::::::::::::::::::::::::::::::::::::::::::: ::.::::::::: gi|755 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYNSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|755 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL ::::::::.::::::::::::::.::::::::::::::::::::::::::.::::::::: gi|755 VFAHVVEQHWEWKNFQVTLTKRRAMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::.::::::::::::::::::::::::..:::.:::::::::::::::: gi|755 QCYVFSTKNWNTPIIFDLKEGTVSLILQAERHFLLVDGSSIYLYSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::.:::::: gi|755 TDILNAQTVSLSNDTIAIRDKADEKIIFLFEASTGKPLGDGKFLSHKNEILEIALDQKGL 420 430 440 450 460 470 >>gi|149731034|ref|XP_001489193.1| PREDICTED: intraflage (777 aa) initn: 2860 init1: 2860 opt: 2860 Z-score: 3432.5 bits: 645.1 E(): 1.7e-182 Smith-Waterman score: 2860; 96.347% identity (99.087% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::: ::::::::::::::::::::::::::::::::.::::::. :::: gi|149 MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWSLLTSETTQIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR ::.::::::::::::::::::::::.:::::::::::::::::::::.:::::::::::: gi|149 PDEIYPIDLHWFPKSLGIKKQTQAENFVLTSSDGKFHLISKLGRVEKTVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|149 WNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT :::::::::::::::::::::::::::::::::::::::::::: :: ::.::::::::: gi|149 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSDGRPLYSSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV ::::::::::::::::::::::::::::::::::.::::::::::.:::::::::::::: gi|149 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPSTGSIFNIAWSVDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|149 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::::::::::::::::::::::::.:::::::.:::::::::::::::: gi|149 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLLDGGGIYLYSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::::::::: gi|149 TDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKSEVLEIALDQKGL 420 430 440 450 460 470 >>gi|61217653|sp|Q9P2H3.2|IFT80_HUMAN RecName: Full=Intr (777 aa) initn: 2852 init1: 2852 opt: 2852 Z-score: 3422.9 bits: 643.3 E(): 6e-182 Smith-Waterman score: 2852; 96.119% identity (99.087% similar) in 438 aa overlap (8-445:1-438) 10 20 30 40 50 60 mKIAA1 HFSGTGDMRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKL ::::::: ::::: :::::::::::::::::::::::::::::::::. :::: gi|612 MRLKISLLKEPKHIELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETTQIVKL 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 PDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR ::::::::.::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|612 PDDIYPIDFHWFPKSLGVKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 WNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|612 WNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPIT ::::::::::::::::::::::::::::::::::::::::::::::: ::.::::::::: gi|612 PLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYNSQPHEHPIT 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 SVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 VFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSL ::::::::.::::::::::::::.::::::::::::::::::::::::::.::::::::: gi|612 VFAHVVEQHWEWKNFQVTLTKRRAMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSL 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 QCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMR :::::::::::::.::::::::::::::::::::::::..:::.:::::::::::::::: gi|612 QCYVFSTKNWNTPIIFDLKEGTVSLILQAERHFLLVDGSSIYLYSYEGRFISSPKFPGMR 360 370 380 390 400 410 430 440 mKIAA1 TDILNAQTVSLSNDTIAIKDKADEKK ::::::::::::::::::.:::::: gi|612 TDILNAQTVSLSNDTIAIRDKADEKIIFLFEASTGKPLGDGKFLSHKNEILEIALDQKGL 420 430 440 450 460 470 446 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 23:28:39 2009 done: Fri Mar 13 23:35:25 2009 Total Scan time: 914.910 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]