FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4213.ptfa, 509 aa vs ./tmplib.26680 library 1768508 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.7728+/-0.00658; mu= 8.1669+/- 0.437 mean_var=204.4656+/-49.645, 0's: 0 Z-trim: 1 B-trim: 79 in 1/35 Lambda= 0.0897 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1541 ( 471 res) mnh10009 ( 471) 2761 370 3e-103 >>mKIAA1541 ( 471 res) mnh10009 (471 aa) initn: 2828 init1: 2739 opt: 2761 Z-score: 1946.0 bits: 369.5 E(): 3e-103 Smith-Waterman score: 2761; 87.152% identity (88.478% ungapped) in 467 aa overlap (50-509:5-471) 20 30 40 50 60 70 mKIAA4 VPSPLRCHPPPSAPSIPPSPGVGAEPRSRRPRRARQG-HHLQRDMAGAGGG------NDI :: : : . : ::::::: ::. mKIAA1 ALGAPRSAALGWARPARAMAGAGGGGCPAGGNDF 10 20 30 80 90 100 110 120 130 mKIAA4 QWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE ::::::::::::.::::::::::::::.::.:::::::::::::::.::::: ..::::: mKIAA1 QWCFSQVKGAVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKGRAHSRGE 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA4 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKR ::::::::::::::::::::::::::::::::::.:::.::::::::::::::::::::: mKIAA1 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKISERDKR 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA4 PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE ::::::.:::: ::: .:.::::...::::::::::::::::::::::::::.:::.: mKIAA1 AEGYNLKDEDGRLRDPFRITALRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSDHE 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA4 TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT ::::::::::::::::::::::::::::::::::::::::::::::..::.::::::::: mKIAA1 TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGT 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA4 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKI :::::::.:::::::.:.::::::::.::::::::::::::::::::::::::::::::. mKIAA1 IRLCDMRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKV 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA4 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD ::::::.:::::.::::::::::::::::::::::::::::::::..::::::::::::: mKIAA1 WDLNMEGRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFD 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA4 RNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENI :::.::.::::::::.:::. :::::::..:::::::::::::::::::::::::: :.: mKIAA1 RNTRRDVTLEASRENSKPRASLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAWHPMESI 400 410 420 430 440 450 500 mKIAA4 IAVATTNNLYIFQDKVN ::::.::::::::::.: mKIAA1 IAVAATNNLYIFQDKIN 460 470 509 residues in 1 query sequences 1768508 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:05:19 2006 done: Mon Mar 27 11:05:20 2006 Scan time: 0.650 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]