FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4213.ptfa, 509 aa
 vs ./tmplib.26680 library

1768508 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.7728+/-0.00658; mu= 8.1669+/- 0.437
 mean_var=204.4656+/-49.645, 0's: 0 Z-trim: 1  B-trim: 79 in 1/35
 Lambda= 0.0897

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1541  ( 471 res)   mnh10009                   ( 471) 2761  370  3e-103


>>mKIAA1541  ( 471 res)   mnh10009                        (471 aa)
 initn: 2828 init1: 2739 opt: 2761  Z-score: 1946.0  bits: 369.5 E(): 3e-103
Smith-Waterman score: 2761;  87.152% identity (88.478% ungapped) in 467 aa overlap (50-509:5-471)

      20        30        40        50         60              70  
mKIAA4 VPSPLRCHPPPSAPSIPPSPGVGAEPRSRRPRRARQG-HHLQRDMAGAGGG------NDI
                                     :: :  :  .  : :::::::      ::.
mKIAA1                           ALGAPRSAALGWARPARAMAGAGGGGCPAGGNDF
                                         10        20        30    

             80        90       100       110       120       130  
mKIAA4 QWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE
       ::::::::::::.::::::::::::::.::.:::::::::::::::.::::: ..:::::
mKIAA1 QWCFSQVKGAVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKGRAHSRGE
           40        50        60        70        80        90    

            140       150       160       170       180       190  
mKIAA4 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKR
       ::::::::::::::::::::::::::::::::::.:::.:::::::::::::::::::::
mKIAA1 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKISERDKR
          100       110       120       130       140       150    

            200       210       220       230       240       250  
mKIAA4 PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE
        ::::::.:::: :::  .:.::::...::::::::::::::::::::::::::.:::.:
mKIAA1 AEGYNLKDEDGRLRDPFRITALRVPILKPMDLMVEASPRRIFANAHTYHINSISVNSDHE
          160       170       180       190       200       210    

            260       270       280       290       300       310  
mKIAA4 TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT
       ::::::::::::::::::::::::::::::::::::::::::::::..::.:::::::::
mKIAA1 TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGT
          220       230       240       250       260       270    

            320       330       340       350       360       370  
mKIAA4 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKI
       :::::::.:::::::.:.::::::::.::::::::::::::::::::::::::::::::.
mKIAA1 IRLCDMRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKV
          280       290       300       310       320       330    

            380       390       400       410       420       430  
mKIAA4 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD
       ::::::.:::::.::::::::::::::::::::::::::::::::..:::::::::::::
mKIAA1 WDLNMEGRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFD
          340       350       360       370       380       390    

            440       450       460       470       480       490  
mKIAA4 RNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENI
       :::.::.::::::::.:::. :::::::..:::::::::::::::::::::::::: :.:
mKIAA1 RNTRRDVTLEASRENSKPRASLKPRKVCTGGKRKKDEISVDSLDFNKKILHTAWHPMESI
          400       410       420       430       440       450    

            500         
mKIAA4 IAVATTNNLYIFQDKVN
       ::::.::::::::::.:
mKIAA1 IAVAATNNLYIFQDKIN
          460       470 




509 residues in 1 query   sequences
1768508 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:05:19 2006 done: Mon Mar 27 11:05:20 2006
 Scan time:  0.650 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]