FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1080.ptfa, 612 aa vs ./tmplib.26680 library 1768405 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.2125+/-0.00554; mu= 11.0687+/- 0.369 mean_var=148.9264+/-34.236, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.1051 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0154 ( 724 res) mfj21098 ( 724) 1169 189 1.3e-48 >>mKIAA0154 ( 724 res) mfj21098 (724 aa) initn: 1233 init1: 668 opt: 1169 Z-score: 965.3 bits: 189.0 E(): 1.3e-48 Smith-Waterman score: 1520; 41.274% identity (51.736% ungapped) in 722 aa overlap (22-604:2-716) 10 20 30 40 50 60 mKIAA1 LRPQRWAGQMAATAVAAGTGSPAGTESAEGGPGAAAALELWLNKATDPSMAEQDWSAIQK :.: . ::. . .:: ::::::.:: ..:: : mKIAA0 GPGGCNMAEA---EGESLESWLNKATNPSNRQEDWEYIIG 10 20 30 70 80 90 100 110 120 mKIAA1 FCEQVNTDPSGPTHAPWLLAHKIQSPQEKEALYALTVLEICMNHCGEKFHSEVAKFRFLN ::.:.: . :: : ::::::::::: ::. :::::: ::..::...:.::.:::::: mKIAA0 FCDQINKELEGPQIAVRLLAHKIQSPQEWEAVQALTVLEACMKNCGRRLHNEVGKFRFLN 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 ELIKVLSPKYLGAWATEKVKGRVIEILFSWTVWFPEDIKIRDAYQMLKKQGIIKQDPKLP :::::.:::::: ..:::: .:::.:::::. .::. ::.:::.:::.:::...:: .: mKIAA0 ELIKVVSPKYLGDRVSEKVKTKVIELLFSWTLALPEEAKIKDAYHMLKRQGIVQSDPPIP 100 110 120 130 140 150 190 200 210 220 230 mKIAA1 MDK-ILPPPSPWPKS-IFDADEEKSKLLTRLLKSNHPEDLQAANRLIKNLVKEEQEKSEK ::. ..: : : ::. .:: ::::::::.:::::..:.::: ::::::..:::.. . .: mKIAA0 MDRTLIPSPPPRPKNPVFD-DEEKSKLLARLLKSKNPDDLQEANRLIKSMVKEDEARIQK 160 170 180 190 200 210 240 250 260 270 280 290 mKIAA1 VSRRVSAVEEVRSHVRVLREMLSMYRRPGHALPDQQALQVVYERCEKLRPTLFRLASDTT :..:. ..::: ..:..:.::: : . . :.. .. ...:::. : :::.:::.: mKIAA0 VTKRLHTLEEVNNNVKLLHEMLLHYSQEYSSDADKELMKELFDRCENKRRTLFKLASETE 220 230 240 250 260 270 300 310 320 330 340 mKIAA1 DDDDALAEILQANDLLTQGVRLYKQVVEGRV------------SAGNAVPAAVGAI---- :.:..:..::::.: :.. . :: ..::.. : ::. . ::. mKIAA0 DNDNSLGDILQASDNLSRVINSYKTIIEGQIVNGEVTTSTMPDSEGNSHCGNQGALIDLA 280 290 300 310 320 330 350 360 370 mKIAA1 --PAPR-AFPNPEPCGLNCPLI----------------DLETP----------SLLHQDL :: . : : . :.. . :.: ::: ..: mKIAA0 ELDAPSNSSPALAPPTSGIPILPPPPQTSGPPRSRSSSQAEAPPGSDSTNNALSLLDEEL 340 350 360 370 380 390 380 390 400 mKIAA1 AALGIND-VPT--------------RNQ------------VVIPSCCNDKKQ---PGAIT ::..: .:: .:. : . :: .: : : . . mKIAA0 LCLGLTDPAPTAPKESPGSSQWHLFQNEPPSDLDFFSPRPVPVASCPSDGPQLPPPVSTS 400 410 420 430 440 450 410 420 430 440 mKIAA1 LMG---------GGIQSLSADRNLLD--LFSPQPSPGLNYVPQKSIPK--EVP------- :. . . :: . .:: :.:.: .: :. :: : : mKIAA0 SMSQAPLPAAFPAPVVPASAPTHSTGSFMFSSGPAPAL--AP-KAEPKGPEYPSSSTSHR 460 470 480 490 500 510 450 460 mKIAA1 -------------------------PGTKASPGWSWEA----------GPLASSTASQNT :: ::: : :: . ::.. mKIAA0 LDALDQLLEEAKVTSGLVKPVSCFSPGPTASPLLPASAPARPLLPFSTGPGSPLFQSQGS 520 530 540 550 560 570 470 480 490 500 510 520 mKIAA1 P-------LAHVFVPLESVKPSSLPPIVVYDRNGFRILLHFSQTGAPGHPDVKVLLLTMM : :: : :::::.:::: :...::.::::::.::.. ::.::: :....:. mKIAA0 PQKGPELSLASVHVPLESIKPSSALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSML 580 590 600 610 620 630 530 540 550 560 570 580 mKIAA1 STATQPVWDVMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQTLLLDNPHKEPIRL .:: :: ....:.::::::.::::: :...: :::..:::.:.:..:: :: :: .:: mKIAA0 NTAPLPVKSIVLQAAVPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPMKEKVRL 640 650 660 670 680 690 590 600 610 mKIAA1 RYKLTFNQGGQPFSEVGEVKDFPDLAVLSTA :::::: : : .:.::: .:: mKIAA0 RYKLTFALGEQLSTELGEVDQFPPVEQWGNL 700 710 720 612 residues in 1 query sequences 1768405 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:36 2006 done: Mon Mar 27 10:35:37 2006 Scan time: 0.790 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]