FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4132.ptfa, 147 aa
 vs ./tmplib.26680 library

1768870 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.3077+/-0.00379; mu= 11.4178+/- 0.254
 mean_var=65.1614+/-14.946, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1589

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0721  ( 404 res)   mfj08144                   ( 404)  655  158 2.9e-40
mKIAA1750  ( 415 res)   mfj01371                   ( 415)  450  111 4.1e-26


>>mKIAA0721  ( 404 res)   mfj08144                        (404 aa)
 initn: 380 init1: 380 opt: 655  Z-score: 815.2  bits: 158.3 E(): 2.9e-40
Smith-Waterman score: 655;  66.216% identity (67.123% ungapped) in 148 aa overlap (2-147:257-404)

                                            10        20        30 
mKIAA4                              AMIRGRDAEMLRYVTSLEVKELRHPKTGCKF
                                     :: :.: .:.::. .:::.::..:..::::
mKIAA0 RLHMQRRSFIIQNIPGFWVTAFRNHPQLSPMISGQDEDMMRYMINLEVEELKQPRVGCKF
        230       240       250       260       270       280      

              40        50        60        70        80           
mKIAA4 KFFFRRNPYFRNKLIVKEYEVRSSGRVVSLSTPIIWRRGHEPQSFIRRNQD--LICSFFT
       ::.:. ::::::. .::::: ::::::::::::: :.::.:::. :.::..   : :::.
mKIAA0 KFIFQSNPYFRNEGLVKEYERRSSGRVVSLSTPIRWHRGQEPQAHIHRNREGNTIPSFFN
        290       300       310       320       330       340      

      90       100       110       120       130       140       
mKIAA4 WFSDHSLPESDRIAEIIKEDLWPNPLQYYLCREGIRRPRRRPIREPVEIPRPFGFQSG
       ::::::: : :::::::: .:: :::::::  .: ::  : : :.::: :: : ::::
mKIAA0 WFSDHSLLEFDRIAEIIKGELWSNPLQYYLMGDGPRRGVRVPPRQPVESPRSFRFQSG
        350       360       370       380       390       400    

>>mKIAA1750  ( 415 res)   mfj01371                        (415 aa)
 initn: 410 init1: 410 opt: 450  Z-score: 561.2  bits: 111.3 E(): 4.1e-26
Smith-Waterman score: 450;  50.350% identity (51.064% ungapped) in 143 aa overlap (1-141:267-409)

                                             10        20        30
mKIAA4                               AMIRGRDAEMLRYVTSLEVKELRHPKTGCK
                                     :..  .: :.: :.. :::.::   . : :
mKIAA1 RLHHLERRNLLIQSIPGFWGQAFQNHPQLSAFLNTKDKEVLSYLNRLEVEELGLARLGYK
        240       250       260       270       280       290      

               40        50        60        70        80        90
mKIAA4 FKFFFRRNPYFRNKLIVKEYEVRSSGRVVSLSTPIIWRRGHEPQSFIRRNQDLICSFFTW
       .::.: :::::.::...:::    ::.::: :.:: :  ::. ::. ..: .   ::: :
mKIAA1 IKFYFGRNPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHDLQSLSKENPENNGSFFGW
        300       310       320       330       340       350      

              100       110       120       130         140       
mKIAA4 FSDHSLPESDRIAEIIKEDLWPNPLQYYLCREGIRRPRRRPIRE-PVEI-PRPFGFQSG
       ::.::  :::.:.:::.::::::::::::  :  :  . .  :  :... : :      
mKIAA1 FSNHSSIESDKIVEIINEDLWPNPLQYYLISEEARGEKGKEERPGPAKLSPAPAVRQPN
        360       370       380       390       400       410     




147 residues in 1 query   sequences
1768870 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:02:51 2006 done: Mon Mar 27 11:02:52 2006
 Scan time:  0.350 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]