# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpj01317.fasta.nr -Q ../query/mKIAA0036.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0036, 167 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920953 sequences Expectation_n fit: rho(ln(x))= 5.2257+/-0.000183; mu= 6.9035+/- 0.010 mean_var=72.1163+/-13.922, 0's: 26 Z-trim: 27 B-trim: 0 in 0/66 Lambda= 0.151028 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|47115793|sp|Q8BP00.2|IQCB1_MOUSE RecName: Full= ( 598) 1120 252.7 6.8e-65 gi|26347369|dbj|BAC37333.1| unnamed protein produc ( 598) 1120 252.7 6.8e-65 gi|148665529|gb|EDK97945.1| IQ calmodulin-binding ( 600) 1120 252.7 6.8e-65 gi|74002724|ref|XP_857397.1| PREDICTED: similar to ( 465) 997 225.8 6.5e-57 gi|74002722|ref|XP_535758.2| PREDICTED: similar to ( 598) 997 225.9 7.9e-57 gi|149731279|ref|XP_001502301.1| PREDICTED: IQ mot ( 598) 992 224.8 1.7e-56 gi|88954370|gb|AAI14050.1| IQ motif containing B1 ( 598) 987 223.7 3.6e-56 gi|119599905|gb|EAW79499.1| IQ motif containing B1 ( 465) 982 222.5 6.3e-56 gi|57230950|gb|AAW47233.1| nephrocystin 5 [Homo sa ( 598) 982 222.6 7.6e-56 gi|3123054|sp|Q15051.1|IQCB1_HUMAN RecName: Full=I ( 598) 982 222.6 7.6e-56 gi|114588683|ref|XP_001150926.1| PREDICTED: nephro ( 633) 981 222.4 9.3e-56 gi|13543281|gb|AAH05806.1| IQ motif containing B1 ( 465) 966 219.1 7e-55 gi|66393905|gb|AAY46029.1| p53 and DNA damage-regu ( 465) 958 217.3 2.3e-54 gi|148665525|gb|EDK97941.1| IQ calmodulin-binding ( 263) 604 140.0 2.5e-31 gi|148665527|gb|EDK97943.1| IQ calmodulin-binding ( 413) 604 140.1 3.5e-31 gi|22137683|gb|AAH29084.1| Iqcb1 protein [Mus musc ( 597) 604 140.3 4.7e-31 gi|149060546|gb|EDM11260.1| IQ calmodulin-binding ( 223) 579 134.5 9.5e-30 gi|149060545|gb|EDM11259.1| IQ calmodulin-binding ( 373) 579 134.7 1.4e-29 gi|149060544|gb|EDM11258.1| IQ calmodulin-binding ( 557) 579 134.8 2e-29 gi|118093787|ref|XP_422091.2| PREDICTED: similar t ( 597) 559 130.5 4.2e-28 gi|224054662|ref|XP_002190142.1| PREDICTED: hypoth ( 594) 538 125.9 1e-26 gi|46249608|gb|AAH68847.1| MGC81507 protein [Xenop ( 594) 449 106.5 6.9e-21 gi|115313720|gb|AAI23942.1| IQ calmodulin-binding ( 594) 438 104.1 3.6e-20 gi|56269318|gb|AAH86739.1| Zgc:101792 [Danio rerio ( 595) 422 100.6 4.1e-19 gi|148665528|gb|EDK97944.1| IQ calmodulin-binding ( 124) 310 75.7 2.6e-12 gi|115613093|ref|XP_782682.2| PREDICTED: similar t ( 581) 317 77.7 3.1e-12 gi|210099317|gb|EEA47413.1| hypothetical protein B ( 590) 312 76.6 6.7e-12 gi|149060547|gb|EDM11261.1| IQ calmodulin-binding ( 84) 301 73.6 7.5e-12 gi|156228231|gb|EDO49031.1| predicted protein [Nem ( 576) 287 71.2 2.9e-10 gi|115729194|ref|XP_001199176.1| PREDICTED: hypoth ( 119) 258 64.4 6.6e-09 gi|190587640|gb|EDV27682.1| hypothetical protein T ( 594) 252 63.6 5.8e-08 >>gi|47115793|sp|Q8BP00.2|IQCB1_MOUSE RecName: Full=IQ c (598 aa) initn: 1120 init1: 1120 opt: 1120 Z-score: 1321.4 bits: 252.7 E(): 6.8e-65 Smith-Waterman score: 1120; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:432-598) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ :::::::::::::::::::::::::::::: gi|471 RERKNFRQQRPSLTEYKAAVTLQRAVLKFLAKCRKKKKLFASWHGLQELTDARRVELKQQ 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP ::::::::::::::::: gi|471 ELSIDLGMLFIGGTKPP 590 >>gi|26347369|dbj|BAC37333.1| unnamed protein product [M (598 aa) initn: 1120 init1: 1120 opt: 1120 Z-score: 1321.4 bits: 252.7 E(): 6.8e-65 Smith-Waterman score: 1120; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:432-598) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ :::::::::::::::::::::::::::::: gi|263 RERKNFRQQRPSLTEYKAAVTLQRAVLKFLAKCRKKKKLFASWHGLQELTDARRVELKQQ 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP ::::::::::::::::: gi|263 ELSIDLGMLFIGGTKPP 590 >>gi|148665529|gb|EDK97945.1| IQ calmodulin-binding moti (600 aa) initn: 1120 init1: 1120 opt: 1120 Z-score: 1321.4 bits: 252.7 E(): 6.8e-65 Smith-Waterman score: 1120; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:434-600) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ :::::::::::::::::::::::::::::: gi|148 RERKNFRQQRPSLTEYKAAVTLQRAVLKFLAKCRKKKKLFASWHGLQELTDARRVELKQQ 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP ::::::::::::::::: gi|148 ELSIDLGMLFIGGTKPP 590 600 >>gi|74002724|ref|XP_857397.1| PREDICTED: similar to nep (465 aa) initn: 997 init1: 997 opt: 997 Z-score: 1178.1 bits: 225.8 E(): 6.5e-57 Smith-Waterman score: 997; 87.425% identity (96.407% similar) in 167 aa overlap (1-167:299-465) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ ::::::::::: :.:::.:::::::::::: gi|740 RERKNFRQQRPSLTEYKAAVILQRATLKFLAKCRKKKKLFAPWRGLQDLTDARRVELKQQ 270 280 290 300 310 320 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL ::::..::: ::::. .:::::.::::.::::.::::.:::::::::::::::::::::: gi|740 VDDYLRRHPSSQMSDMTSRELHSQAQEQLQHYLMGRALEERAQQHREALMAQISTNIEQL 330 340 350 360 370 380 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD ::::::::::::::: ::::::::::::::::::.::::::::::::::: :::.::::: gi|740 MKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTALKHIQAPWWKKLGEEAGDEIDVPKD 390 400 410 420 430 440 160 mKIAA0 ELSIDLGMLFIGGTKPP :.:..:: ::::::::: gi|740 EFSLELGTLFIGGTKPP 450 460 >>gi|74002722|ref|XP_535758.2| PREDICTED: similar to IQ (598 aa) initn: 997 init1: 997 opt: 997 Z-score: 1176.6 bits: 225.9 E(): 7.9e-57 Smith-Waterman score: 997; 87.425% identity (96.407% similar) in 167 aa overlap (1-167:432-598) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ ::::::::::: :.:::.:::::::::::: gi|740 RERKNFRQQRPSLTEYKAAVILQRATLKFLAKCRKKKKLFAPWRGLQDLTDARRVELKQQ 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL ::::..::: ::::. .:::::.::::.::::.::::.:::::::::::::::::::::: gi|740 VDDYLRRHPSSQMSDMTSRELHSQAQEQLQHYLMGRALEERAQQHREALMAQISTNIEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD ::::::::::::::: ::::::::::::::::::.::::::::::::::: :::.::::: gi|740 MKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTALKHIQAPWWKKLGEEAGDEIDVPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP :.:..:: ::::::::: gi|740 EFSLELGTLFIGGTKPP 590 >>gi|149731279|ref|XP_001502301.1| PREDICTED: IQ motif c (598 aa) initn: 992 init1: 992 opt: 992 Z-score: 1170.7 bits: 224.8 E(): 1.7e-56 Smith-Waterman score: 992; 88.024% identity (95.210% similar) in 167 aa overlap (1-167:432-598) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ ::::::::.:: :.::.::::::::::::: gi|149 RERKNFHQQKPSLTEHKAAVTLQRAALKFLAKCRKKKKVFAPWQGLRELTDARRVELKQQ 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL :::::.::: : : ...:::::::::::::::::::..:::::::::::::::::::::: gi|149 VDDYVRRHPGSPMLDVTSRELHAQAQERLQHYFMGRVLEERAQQHREALMAQISTNIEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD .:::::::::::::: :::::::::::::::::::::::::::::::::: ::: ::::: gi|149 LKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEAGDESDVPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP :::..:: ::::::::: gi|149 ELSVELGTLFIGGTKPP 590 >>gi|88954370|gb|AAI14050.1| IQ motif containing B1 [Bos (598 aa) initn: 987 init1: 987 opt: 987 Z-score: 1164.8 bits: 223.7 E(): 3.6e-56 Smith-Waterman score: 987; 85.629% identity (95.808% similar) in 167 aa overlap (1-167:432-598) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ ::::::::::: : ::.:::::::.::::: gi|889 RERKNFRQQRPSLTEYKAAVILQRATLKFLAKCRKKKKLFAPWPGLRELTDARRIELKQQ 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL ::::..::: ::.:...:::::.::::::: ::::::.:::.:::::::::::::::::: gi|889 VDDYIRRHPGSQISDVTSRELHSQAQERLQCYFMGRALEERSQQHREALMAQISTNIEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD ::::::::::::.:: :::::::::::::::::::::::::::::::::: ::..:.::: gi|889 MKAPSLKEAEGKDPELFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEAGDDIDIPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP :::..:: ::::::::: gi|889 ELSVELGTLFIGGTKPP 590 >>gi|119599905|gb|EAW79499.1| IQ motif containing B1, is (465 aa) initn: 982 init1: 982 opt: 982 Z-score: 1160.4 bits: 222.5 E(): 6.3e-56 Smith-Waterman score: 982; 88.024% identity (95.210% similar) in 167 aa overlap (1-167:299-465) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ ::::::::::: :.::::::::::::::.. gi|119 RERKNFHQQRQSLIEYKAAVTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKR 270 280 290 300 310 320 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL :::::.:: : ::...::::::::::::::::::::.:::::::::::.::::::.::: gi|119 VDDYVRRHLGSPMSDVVSRELHAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQL 330 340 350 360 370 380 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD ::::::::::::::: :::::::::::::::::::::::::::::::::: :::.::::: gi|119 MKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDEIDVPKD 390 400 410 420 430 440 160 mKIAA0 ELSIDLGMLFIGGTKPP ::::.: ::::::::: gi|119 ELSIELENLFIGGTKPP 450 460 >>gi|57230950|gb|AAW47233.1| nephrocystin 5 [Homo sapien (598 aa) initn: 982 init1: 982 opt: 982 Z-score: 1158.9 bits: 222.6 E(): 7.6e-56 Smith-Waterman score: 982; 88.024% identity (95.210% similar) in 167 aa overlap (1-167:432-598) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ ::::::::::: :.::::::::::::::.. gi|572 RERKNFHQQRQSLIEYKAAVTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKR 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL :::::.:: : ::...::::::::::::::::::::.:::::::::::.::::::.::: gi|572 VDDYVRRHLGSPMSDVVSRELHAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD ::::::::::::::: :::::::::::::::::::::::::::::::::: :::.::::: gi|572 MKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDEIDVPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP ::::.: ::::::::: gi|572 ELSIELENLFIGGTKPP 590 >>gi|3123054|sp|Q15051.1|IQCB1_HUMAN RecName: Full=IQ ca (598 aa) initn: 982 init1: 982 opt: 982 Z-score: 1158.9 bits: 222.6 E(): 7.6e-56 Smith-Waterman score: 982; 88.024% identity (95.210% similar) in 167 aa overlap (1-167:432-598) 10 20 30 mKIAA0 AKCRKKKKLFASWHGLQELTDARRVELKQQ ::::::::::: :.::::::::::::::.. gi|312 RERKNFHQQRQSLIEYKAAVTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKR 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA0 VDDYVKRHPCSQMSEAASRELHAQAQERLQHYFMGRAIEERAQQHREALMAQISTNIEQL :::::.:: : ::...::::::::::::::::::::.:::::::::::.::::::.::: gi|312 VDDYVRRHLGSPMSDVVSRELHAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQL 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA0 MKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEEPGDEVDVPKD ::::::::::::::: :::::::::::::::::::::::::::::::::: :::.::::: gi|312 MKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDEIDVPKD 530 540 550 560 570 580 160 mKIAA0 ELSIDLGMLFIGGTKPP ::::.: ::::::::: gi|312 ELSIELENLFIGGTKPP 590 167 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 14:30:03 2009 done: Thu Mar 12 14:34:22 2009 Total Scan time: 622.470 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]