FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1281.ptfa, 196 aa
 vs ./tmplib.26680 library

1768821 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9454+/-0.00482; mu= 12.5396+/- 0.322
 mean_var=114.2587+/-26.325, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1200

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0295  ( 804 res)   mbg22077                   ( 804)  433   85 7.9e-18


>>mKIAA0295  ( 804 res)   mbg22077                        (804 aa)
 initn: 412 init1: 251 opt: 433  Z-score: 412.4  bits: 85.2 E(): 7.9e-18
Smith-Waterman score: 452;  42.938% identity (49.673% ungapped) in 177 aa overlap (1-174:555-710)

                                             10        20        30
mKIAA1                               DREKKLKEDSPRKTPNKESGVSSLPVSLTN
                                     .:..:::::  :.        .:.:     
mKIAA0 YRQETESRMWTYVYPAKYSDIKSEDDRWKEERDRKLKEDRSRSK-------DSVP-----
          530       540       550       560              570       

               40          50        60        70        80        
mKIAA1 IKEEPKEGKRPDSQ--SVEENKLKNDDRKTPVNWKDSRGTRVAVSSPMSQHQSYIQYLHA
        ::. ::.   : .    ::..: . . .  :.        : ::::..:::::: :.:.
mKIAA0 -KEDGKESTSSDCKLPPSEESRLGSKEPRPSVH--------VPVSSPLTQHQSYIPYMHG
             580       590       600               610       620   

       90       100       110       120        130       140       
mKIAA1 YPYPQMYDPSHPAYRAVSPVLMHSYPGAYLSPGFHYPVYG-KMSGREEAEKVNTSPSINT
       : : : :::.::.::..  :.:..:::.::  .. .  :: :.:: :.:.:. .:::.. 
mKIAA0 YSYSQSYDPNHPSYRGMPAVMMQNYPGSYLPSSYSFSPYGSKVSGGEDADKARASPSVSC
           630       640       650       660       670       680   

       150       160       170       180       190                 
mKIAA1 KTASEAKALDLLQHHANQYRSKSPAVSLLLLVVKRPCLVGEGRQETEQS           
       :..::.::::.::.::..:.::::..:                                 
mKIAA0 KASSESKALDILQQHASHYKSKSPTISDKNSQERDRGGCGVVGGGGSCGSVAGAGGTDRS
           690       700       710       720       730       740   




196 residues in 1 query   sequences
1768821 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:39:55 2006 done: Mon Mar 27 10:39:55 2006
 Scan time:  0.430 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]