FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1341.ptfa, 506 aa vs ./tmplib.26680 library 1768511 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.2164+/-0.00547; mu= 15.4985+/- 0.366 mean_var=151.4795+/-35.951, 0's: 0 Z-trim: 7 B-trim: 43 in 1/35 Lambda= 0.1042 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4193 ( 703 res) mid07075 ( 703) 895 146 6.8e-36 mKIAA0689 ( 643 res) mfj03025 ( 643) 179 39 0.0016 >>mKIAA4193 ( 703 res) mid07075 (703 aa) initn: 865 init1: 502 opt: 895 Z-score: 736.8 bits: 146.4 E(): 6.8e-36 Smith-Waterman score: 1337; 48.898% identity (58.937% ungapped) in 499 aa overlap (15-504:2-424) 10 20 30 40 50 mKIAA1 RHCSARSPHRGRGGARGGMADADKSEAAAGDDGSQQQPA-EPRRDTHPGEPEKPPRSSAN ::. . : . ::: ... . : ::. . . : : : ..: mKIAA4 RARSLTQSPDAEKMAAGVEAAAEVAATEPKMEEESGAPCVPSGNGAP 10 20 30 40 60 70 80 90 100 110 mKIAA1 GVKMENDESVKEEKSDLKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYD : : :. . .:.. :::. .. .:::.:::. . : :.::.:::.: mKIAA4 GPKGEERPTQNEKR---KEKNI-KRGGNRFEPYSNPTK----------RYRAFITNIPFD 50 60 70 80 90 120 130 140 150 160 170 mKIAA1 MKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRP .:::..:::..:::::::::::. :::::::::.::::: :: .::: :..::..::::: mKIAA4 VKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRP 100 110 120 130 140 150 180 190 200 210 220 230 mKIAA1 LNIKEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGR :..:::::::.::::.:. ::: mKIAA4 LKVKEDPDGEHARRAMQK---------------------------------------AGR 160 170 240 250 260 270 280 290 mKIAA1 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI ::::.::::::.::::::::::::.::.: :::: :::::::::.: :::::.::::::: mKIAA4 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAI 180 190 200 210 220 230 300 310 320 330 340 350 mKIAA1 SMFNGQFLFDRPMHVKMDDKSVPHEDYRSHDSKTSQLPRGLGGIGMGLGPGGQPISASQL ::::::.:::::::::::....:. :. . . .:::.::::::::::::::::.:..: mKIAA4 SMFNGQLLFDRPMHVKMDERALPKGDFFPPE-RPQQLPHGLGGIGMGLGPGGQPIDANHL 240 250 260 270 280 290 360 370 380 390 400 410 mKIAA1 NITGV-MGNLGPSGMGMDGPGFGGVNRIGGGVG-FGGLEAMNSMAGFG---GVGRMGELY . :. ::::::.::::.: ::: .:.::: : ::: .:..:. :: ..::..:. mKIAA4 S-KGIGMGNLGPAGMGMEGIGFG-INKIGGMEGPFGG--GMENMGRFGSGMNMGRINEIL 300 310 320 330 340 420 430 440 450 460 470 mKIAA1 RGAMTSSMERDFGRGDIGLSRGFGDSFGRLGGSMSGMSTVTGGMGMGLDRMSSS-FDRMG .:. ::.: ..: : . :::. :. :: :.::.:.. ..::: mKIAA4 SNALK--------RGEIIAKQGGGGA----GGSVPGIER----MGPGIDRISGAGMERMG 350 360 370 380 390 480 490 500 mKIAA1 PGIGAILER-SIDVDR-GFLSGPMGSGMRDRLGRN :.: ..: . ...: :.. ::: .:.: mKIAA4 AGLGHGMDRVGSEIERMGLVMDRMGS--VERMGSSIERMGPLGLDHMASSIERMGQTMER 400 410 420 430 440 450 mKIAA4 IGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMDRMVPTGMG 460 470 480 490 500 510 >>mKIAA0689 ( 643 res) mfj03025 (643 aa) initn: 244 init1: 159 opt: 179 Z-score: 155.4 bits: 38.7 E(): 0.0016 Smith-Waterman score: 209; 25.227% identity (30.748% ungapped) in 440 aa overlap (111-505:29-434) 90 100 110 120 130 140 mKIAA1 TGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVE ::..::::. . .::.. : :: :. . mKIAA0 NSISAVLSAAIMSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE-VGSVVSFR 10 20 30 40 50 150 160 170 180 190 mKIAA1 LFKDAE-GKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTG : : : :: .: : :..:.: . .:....: ..::: : . .. .:. .. :. : mKIAA0 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV-DNAASEKNKEELKSLG 60 70 80 90 100 110 200 210 220 230 240 250 mKIAA1 TSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLK . . ... : . .:. :: :. ::.: . mKIAA0 PA----------APIIDSPYGDPIDPEDAPESITRA----------VASLPPE------- 120 130 140 260 270 280 290 300 310 mKIAA1 EVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI-SMFNGQF---LFDRPMHVK ..: . .: . ..... . . . :. .:.. ... .. .. : .:: mKIAA0 QMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVT 150 160 170 180 190 200 320 330 340 350 360 370 mKIAA1 --MDDKSVPHEDYRSHDSKTSQLPRGLGGIGMGLGPG---GQPISASQLNITGVMGNLGP . :: : : . . : : :: : : .:: : . .: : . . . : mKIAA0 PLIPGKSQP----VSGPGPGGPGPSGPGGPGPGPAPGLCPGPNVMLNQQNPPAPQPQHLP 210 220 230 240 250 260 380 390 400 410 mKIAA1 SGMGMDGPGF------GGVNRIGG------GVGFGGLE---AMNSMAGFGGVGRMGELYR : : . ::. : : : :.: ::. ..:. :: . : : mKIAA0 RRPVKDIPPLMQTSIQGGIPAPGPIPAAVPGPGPGSLTPGGAMQPQVGMPVVGPV-PLER 270 280 290 300 310 320 420 430 440 450 mKIAA1 GAMTSSMERD-FGRGDI---GLS-RGF-GDSFGR-LGG---SMSGMSTVTGGMG------ : : : : . :: . :. ::. ::. . :: :..: : :: mKIAA0 GQMQISDPRPPMPRGPMPSGGIPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYMGPPHQGP 330 340 350 360 370 380 460 470 480 490 500 mKIAA1 ---MGLD-RMSSSFDRMGPGIGAILERSIDVDRGFLSGPMGSGMRDRLGRN : : : .: : : ..: . : :: . : : : ::. mKIAA0 PMHHGHDNRGPASHDMRGGPLAADPRMLIGEPRGPMIDQRGLPMDGRGGRESRGMETRPM 390 400 410 420 430 440 mKIAA0 ETEVLEPRGMERRMETCAMETRGMDARGLEMRGPGPSSRGPMTGGIQGPGPINMGAGGPQ 450 460 470 480 490 500 506 residues in 1 query sequences 1768511 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:41:40 2006 done: Mon Mar 27 10:41:41 2006 Scan time: 0.630 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]