FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0346.ptfa, 708 aa vs ./tmplib.26680 library 1768309 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.5169+/-0.00756; mu= -9.7474+/- 0.500 mean_var=338.5646+/-83.012, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.0697 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4057 ( 716 res) mbg02624 ( 716) 2139 229 1.4e-60 >>mKIAA4057 ( 716 res) mbg02624 (716 aa) initn: 2124 init1: 2124 opt: 2139 Z-score: 1180.2 bits: 228.9 E(): 1.4e-60 Smith-Waterman score: 2139; 62.708% identity (63.907% ungapped) in 480 aa overlap (197-671:241-716) 170 180 190 200 210 220 mKIAA0 LKIRLIKVESGDKETFIASEVEERRLRMADLTISHCAADVMRA----SKNAKVKGKFRES ..: ...:..: .::. .:.. . mKIAA4 INGEGHENLESSASVNVGLRPRSQIIPSMSVSIYSSSTEVLKACRSLGKNGLSNGHILLD 220 230 240 250 260 270 230 240 250 260 270 280 mKIAA0 YLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPVLLQFCTDPRNPITVIRGL : .: . ::.:::::::::::::.::::: : : ::: .:.::.:::::: mKIAA4 ICPPP---RPPTSPYPPLPKEKLNPPTPSIYLENKRDAFFPPLHQFCINPKNPVTVIRGL 280 290 300 310 320 290 300 310 320 330 340 mKIAA0 AGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCESSRSHTTIA ::.:.:.::::::::::::..:: ::::::. ::.::::: .::..:: :.. :::::: mKIAA4 AGALKLDLGLFSTKTLVEANNEHIVEVRTQLLQPADENWDPSGTKKIWRYENKSSHTTIA 330 340 350 360 370 380 350 360 370 380 390 400 mKIAA0 KYAQYQASSFQESLQQEERESEDEESEEPDSTTGTSPSSAPDPKN-HHIIKFGTNIDLSD ::::::: ::::::. :: : . . .. :. . : .:. : . :: : :::::: mKIAA4 KYAQYQACSFQESLR-EENERRTQVKDYSDNESTCSDNSGRRQKAPFKTIKCGINIDLSD 390 400 410 420 430 440 410 420 430 440 450 460 mKIAA0 AKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNF :.:: ::.:: :::::.::.:.::.:::::.::::::.::: ::::::: ::::::::: mKIAA4 NKKWKLQLHELTKLPAFVRVVSAGNLLSHVGYTILGMNSVQLCMKVPGSRIPGHQENNNF 450 460 470 480 490 500 470 480 490 500 510 520 mKIAA0 CSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRFVQ :::::::::::::::.: : :: ... ::.......: .:::: :.::: .:.:::::.: mKIAA4 CSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQ 510 520 530 540 550 560 530 540 550 560 570 580 mKIAA0 RPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPMIH :::::::::::::::::: ::::::.::::::::.::.::.::::::....:::.:::.: mKIAA4 RPGDLVWINAGTVHWVQAIGWCNNITWNVGPLTAFQYKLAVERYEWNKLQSVKSVVPMVH 570 580 590 600 610 620 590 600 610 620 630 640 mKIAA0 VSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKKIAYQGRVKDEPAYYCN .:::.::..:.::: ::.:::.:::. .::::. ::.:: :::.. ..::..:::: ::. mKIAA4 LSWNMARNIKVSDPKLFEMIKYCLLKILKHCQTLREALVAAGKEVLWHGRINDEPAPYCS 630 640 650 660 670 680 650 660 670 680 690 700 mKIAA0 ECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVVVLEQYRTEELAQAYDAFTL :.:::::.::::.:..:..::.:::..:: mKIAA4 ICEVEVFNLLFVTNESNSQKTYIVHCQNCA 690 700 710 708 residues in 1 query sequences 1768309 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:18:25 2006 done: Mon Mar 27 10:18:26 2006 Scan time: 0.850 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]