FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1491.ptfa, 393 aa
 vs ./tmplib.26680 library

1768624 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.6586+/-0.00771; mu= -7.6299+/- 0.511
 mean_var=325.2839+/-77.635, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0711

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0144  ( 496 res)   mbh03821                   ( 496)  967  112 6.9e-26


>>mKIAA0144  ( 496 res)   mbh03821                        (496 aa)
 initn: 757 init1: 411 opt: 967  Z-score: 557.2  bits: 112.2 E(): 6.9e-26
Smith-Waterman score: 967;  60.938% identity (64.730% ungapped) in 256 aa overlap (4-246:241-494)

                                          10            20         
mKIAA1                            PHTHASVESTA----SSAAFSAAATSAPSAPSS
                                     :.:::: :    ::..::...... :::  
mKIAA0 TTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTV-SAPPP
              220       230       240       250       260          

      30        40        50        60        70        80         
mKIAA1 GVVLPGSMSTVSSLCLGGTTVSVPSSSTRATALVTSGKAPPNLPQGVPPLLHNQYLVGPG
        : . .:... ::: :.  . :. ..:::... .:::::::::: :::::: : :...::
mKIAA0 VVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPG
     270       280       290       300       310       320         

      90         100       110       120        130       140      
mKIAA1 GLLPAYP--IYGYDELQMLQSRLPMDYYGIPFAAPTA-LASRDGNLANNPYSGDVTKFGR
        :: :::  .::::.:::::.:.:.:::.::: .::. :..:::.::.::::::.:::::
mKIAA0 -LLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGR
      330       340       350       360       370       380        

        150       160       170       180       190          200   
mKIAA1 GDSASPAPPTTPAQAQQSQSQTHHTAQQPFLNPGLPPGYSYTGLPYYTGVP---SAFQYG
       ::..:::: :: :: ::.:.:::::.:: ::::.::::::::.::::::::   :.::::
mKIAA0 GDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYG
      390       400       410       420       430       440        

            210       220         230       240       250       260
mKIAA1 PTMF-VPPTSAKQHGVALST--PPTPFQQASGYGQHAYSTGYDDLTQGTAAGDYTKGGYG
       :..: : :::.::::: .:.    ::::: ::::.:.:.::   ::              
mKIAA0 PAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGKLPLTLA            
      450       460       470       480       490                  

              270       280       290       300       310       320
mKIAA1 GSSQAPNKSTGSGPGKGVSVSSGTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSALG




393 residues in 1 query   sequences
1768624 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:46:30 2006 done: Mon Mar 27 10:46:31 2006
 Scan time:  0.630 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]