FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0948.ptfa, 655 aa
 vs ./tmplib.26680 library

1768362 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7415+/-0.00432; mu= 17.2705+/- 0.290
 mean_var=87.6240+/-20.402, 0's: 0 Z-trim: 3  B-trim: 25 in 1/35
 Lambda= 0.1370

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1800  ( 493 res)   mbr27022                   ( 493)  182   46 1.1e-05


>>mKIAA1800  ( 493 res)   mbr27022                        (493 aa)
 initn: 229 init1: 131 opt: 182  Z-score: 194.6  bits: 45.9 E(): 1.1e-05
Smith-Waterman score: 326;  24.558% identity (28.090% ungapped) in 509 aa overlap (169-645:11-487)

      140       150       160       170       180       190        
mKIAA0 KEKALLAEDARFQRLVKLVDSQITCVWHGTLVKLLRSLYTLVLPQISKELQSVEQEVRWR
                                     : . : :  .:..    ....: ....  .
mKIAA1                     KKQLKSTILLLSEELSSQQALIVLGAMEDMESRNSHLLKK
                                   10        20        30        40

      200            210         220       230        240          
mKIAA0 LRRLKYKHL-----VFLAE--SCASFMKEQHSQELLAELL-MHLERRWTEINDSR--TLV
       .  . ::::     . : .  .  .:.. : :.::. .:  . : :  . .  :.  .::
mKIAA1 IVSVLYKHLDNYKSIELLKIIQALTFLHFQ-SKELFMKLRELLLSRLEASVIPSEISVLV
               50        60        70         80        90         

      250         260       270       280       290       300      
mKIAA0 TMMTMAG--HLSESLMNHLEDKCLELVEQFGPDELRKVLVTLAAQSRRSVPLLRAISYHL
       . ..:    ::::. ....:     .. :    ::  ..: :          .: :.  :
mKIAA1 SALSMLPHPHLSETAVSRIE----AVLPQCDFRELNDLVVCL----------MRWIQSDL
     100       110           120       130                 140     

        310       320       330       340       350       360      
mKIAA0 VQKPFPMTKGMLLDLAYAYGKLSFHQTQVSQRLAADLLPFIPSMTPGEVARCAKSFAFLK
       :   .  : :  :::     .:. :. : :  :  :::    .   ::            
mKIAA1 VC--LASTTGKQLDLLQKLDHLGRHRLQQSTNL--DLLWEELKSLKGE------------
           150       160       170         180                     

        370       380       390               400       410        
mKIAA0 WLNLPLFEAFTQHLLSRVQDVSLSHVC--------SVLLAFARLNFHPEQEEDQFFSMVH
       ::.  : :     ::  ..... :..         ...: :. ::. : :. :.::.   
mKIAA1 WLHESLVEESIAALLRFMDEIDYSNIAKIHPFSVLAIILPFSILNYDPPQK-DEFFGACV
     190       200       210       220       230       240         

      420       430       440       450       460          470     
mKIAA0 EKLDPVLGSLEPALQVDLVWALCVLQHVHETELHTVLHPGLHARF---LESKSPKDQSTF
       .  .  ::.:.:.  : : ..: ::..  :  :. ...  . ::.   ::    . .. .
mKIAA1 QCCNSYLGTLDPGTLVFLGFSLAVLEYFPEDLLKKMFNIEFLARLDSQLEILPSSLSARI
      250       260       270       280       290       300        

          480       490       500       510       520       530    
mKIAA0 Q-KLVHINTTALLEHPEYKGPFLPASAVAPIPSPSNKKMTPLQKELQETLKALLGNTDKG
       : .:...: .. :: :: . :..         . ..  :.  :... . :  .::. .  
mKIAA1 QFRLMELNRAVCLECPELQVPWFHDRFCQRQFNKDTGVMNGAQQQIYKMLAEVLGGHQCV
      310       320       330       340       350       360        

          540       550       560            570        580        
mKIAA0 SLEVATQYGWVLDAEVLLDADGHFLPLRNF-VAPH----LAQPVGNQP-LPPGAKRIAFL
       .  . . :  ..  : .::   . :: ..  .::.    .      .: ::: :.:::. 
mKIAA1 KPSALSPYYHTVGFECILDKRKKPLPYESHSIAPRKSLGMHWDSRVEPRLPPEAERIAIE
      370       380       390       400       410       420        

      590       600       610       620         630       640      
mKIAA0 RWEFPNFNSRSKDLLGRFVLARRHVLAAGFLVVDVPYYEW--LDLKSEWQKSAYLKDKMR
         .   : :    : :. .. .::.   :. :...::.::  . ....  .  ::.... 
mKIAA1 LLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQIPYFEWNSMAMSTKDARMDYLREHLF
      430       440       450       460       470       480        

        650     
mKIAA0 KAMAEELAK
                
mKIAA1 GEGKS    
      490       




655 residues in 1 query   sequences
1768362 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:32:32 2006 done: Mon Mar 27 10:32:33 2006
 Scan time:  0.810 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]