FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1128.ptfa, 672 aa
 vs ./tmplib.26680 library

1768345 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.7093+/-0.00543; mu= 13.5974+/- 0.364
 mean_var=139.7105+/-32.518, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1085

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1680  ( 582 res)   mfj12070                   ( 582)  173   39  0.0019


>>mKIAA1680  ( 582 res)   mfj12070                        (582 aa)
 initn: 310 init1: 141 opt: 173  Z-score: 154.1  bits: 38.7 E(): 0.0019
Smith-Waterman score: 263;  31.783% identity (35.965% ungapped) in 258 aa overlap (429-672:128-369)

      400       410       420       430       440       450        
mKIAA1 SEQAFGKAEEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDE
                                     : :  . :: :  .:    .::.::   ..
mKIAA1 PVSDSRVIPSSGDHVFNKTSYGYEASAAKVLASSLSPYREGRYIERRLRSSSEGTAGSSR
       100       110       120       130       140       150       

      460               470       480       490       500       510
mKIAA1 EGLEPI-GSV-------HPVGSYESSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLE
         :.:  : :       : .::  ::.:::.:.::.: ::.:..::::::... :.  :.
mKIAA1 MVLKPKDGHVEASSLRKHRTGS-SSSKMNSLDVLNHLGSCELDEDDLMLDLEFLEEQNLQ
       160       170        180       190       200       210      

              520       530       540       550       560          
mKIAA1 NVECDNMNRFDRTDRNVRQSQDGFWKRPPQRWSGQDHYHLSHPGHYHHHGQS---DLSRG
          :    : :     .  .   .    :    :..   : .:   .   :.    ... 
mKIAA1 PPVC----REDSCHSVMSCTAVLLSPVDP----GKEVNMLEEPKCPEPSKQNLSLRITKD
        220           230       240           250       260        

       570       580       590       600       610       620       
mKIAA1 SPYRESPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKR
       .  .:.  .:   . ..:  .  .. :.  .:  : : . .: :.:.:::::: :::.::
mKIAA1 TD-QEARCSHVSCMPNSPSADWPQQGVE--ENGGI-DSLPFRLMLQECTAVKTLLLKMKR
      270        280       290         300        310       320    

       630       640          650       660       670              
mKIAA1 LLHQHDGSGSLHDVQLSLPSSP---EPEDGDQIYKNEDLLNEITQLKE            
       .:.. : : :  .   ::: ::   ::    .: ..:  . .. :::.            
mKIAA1 VLQESDVSPS--SSTTSLPISPLTEEPLPFKDITRDECSMLRL-QLKDRDELISQLQAEL
          330         340       350       360        370       380 

mKIAA1 EKVQHLQKAFASRVDKSTQTELLGCDGLSLKRLEAVQGGRETTHRNRTMSQSHSTRDRKA
             390       400       410       420       430       440 




672 residues in 1 query   sequences
1768345 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:36:48 2006 done: Mon Mar 27 10:36:48 2006
 Scan time:  0.790 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]