# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpj00623.fasta.nr -Q ../query/mKIAA4202.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4202, 520 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7917982 sequences Expectation_n fit: rho(ln(x))= 4.6777+/-0.000182; mu= 14.1979+/- 0.010 mean_var=69.3741+/-13.373, 0's: 34 Z-trim: 57 B-trim: 30 in 1/64 Lambda= 0.153984 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|74223408|dbj|BAE21579.1| unnamed protein produc (1080) 3509 789.1 0 gi|74141705|dbj|BAE38603.1| unnamed protein produc ( 485) 3323 747.4 2e-213 gi|115311888|sp|Q3V0C5.2|UBP48_MOUSE RecName: Full (1052) 3322 747.5 4.1e-213 gi|123229431|emb|CAM19412.1| ubiquitin specific pr ( 631) 3310 744.6 1.8e-212 gi|123229432|emb|CAM19413.1| ubiquitin specific pr (1036) 3310 744.8 2.6e-212 gi|81870938|sp|Q76LT8.1|UBP48_RAT RecName: Full=Ub (1036) 3261 733.9 4.9e-209 gi|73950261|ref|XP_866736.1| PREDICTED: similar to ( 485) 3212 722.7 5.4e-206 gi|76257392|ref|NP_001027902.1| ubiquitin specific ( 485) 3211 722.5 6.3e-206 gi|219520976|gb|AAI43355.1| USP48 protein [Homo sa (1047) 3210 722.6 1.3e-205 gi|194207925|ref|XP_001504346.2| PREDICTED: ubiqui ( 485) 3206 721.4 1.4e-205 gi|45501059|gb|AAH67261.1| USP48 protein [Homo sap ( 640) 3198 719.8 5.7e-205 gi|119615397|gb|EAW94991.1| ubiquitin specific pep ( 703) 3198 719.8 6.1e-205 gi|73950259|ref|XP_535372.2| PREDICTED: similar to (1036) 3199 720.2 6.9e-205 gi|114554524|ref|XP_513178.2| PREDICTED: ubiquitin ( 892) 3198 719.9 7.2e-205 gi|168277702|dbj|BAG10829.1| ubiquitin carboxyl-te ( 969) 3198 719.9 7.7e-205 gi|119615396|gb|EAW94990.1| ubiquitin specific pep ( 982) 3198 719.9 7.7e-205 gi|85396984|gb|AAI04897.1| USP48 protein [Homo sap ( 983) 3198 719.9 7.7e-205 gi|114554518|ref|XP_001163683.1| PREDICTED: ubiqui ( 983) 3198 719.9 7.7e-205 gi|114554522|ref|XP_001163386.1| PREDICTED: ubiqui (1029) 3198 719.9 8e-205 gi|119615394|gb|EAW94988.1| ubiquitin specific pep (1034) 3198 719.9 8e-205 gi|219521493|gb|AAI43350.1| Ubiquitin specific pep (1035) 3198 719.9 8e-205 gi|114554516|ref|XP_001163789.1| PREDICTED: ubiqui (1035) 3198 719.9 8e-205 gi|74750436|sp|Q86UV5.1|UBP48_HUMAN RecName: Full= (1035) 3198 719.9 8e-205 gi|219517799|gb|AAI43344.1| USP48 protein [Homo sa ( 983) 3192 718.6 2e-204 gi|194665034|ref|XP_001789640.1| PREDICTED: simila ( 485) 3186 717.0 3e-204 gi|126328463|ref|XP_001366380.1| PREDICTED: simila (1036) 3135 705.9 1.3e-200 gi|75571442|sp|Q5ZM45.1|UBP48_CHICK RecName: Full= (1033) 2944 663.5 7.8e-188 gi|166796872|gb|AAI59175.1| LOC100145207 protein [ (1039) 2788 628.9 2.1e-177 gi|18257332|gb|AAH21769.1| Usp48 protein [Mus musc ( 383) 2610 588.9 8.2e-166 gi|66267357|gb|AAH95783.1| Zgc:112364 [Danio rerio ( 514) 2558 577.5 3.1e-162 gi|47208155|emb|CAF94665.1| unnamed protein produc (1114) 2533 572.2 2.5e-160 gi|10439903|dbj|BAB15591.1| unnamed protein produc ( 392) 2475 558.9 8.9e-157 gi|219841796|gb|AAI45296.1| Unknown (protein for M ( 337) 2301 520.2 3.5e-145 gi|114554520|ref|XP_001163710.1| PREDICTED: ubiqui ( 908) 2294 519.1 2.1e-144 gi|90077196|dbj|BAE88278.1| unnamed protein produc ( 270) 1607 366.0 7.6e-99 gi|149535008|ref|XP_001510634.1| PREDICTED: simila ( 286) 1575 358.9 1.1e-96 gi|210087260|gb|EEA35643.1| hypothetical protein B ( 607) 1449 331.2 5e-88 gi|148670666|gb|EDL02613.1| mCG17174, isoform CRA_ ( 263) 1439 328.6 1.3e-87 gi|148670665|gb|EDL02612.1| mCG17174, isoform CRA_ ( 259) 1409 322.0 1.3e-85 gi|210100718|gb|EEA48793.1| hypothetical protein B (1103) 1351 309.7 2.8e-81 gi|149253042|ref|XP_001052064.2| PREDICTED: simila ( 933) 1264 290.3 1.6e-75 gi|193613062|ref|XP_001942636.1| PREDICTED: simila (1166) 1260 289.5 3.5e-75 gi|148697967|gb|EDL29914.1| mCG120445 [Mus musculu ( 777) 1208 277.7 7.9e-72 gi|149620042|ref|XP_001521622.1| PREDICTED: hypoth ( 180) 1198 274.9 1.3e-71 gi|123284487|emb|CAM20437.1| ubiquitin specific pr ( 165) 1175 269.8 4.1e-70 gi|115734128|ref|XP_001188027.1| PREDICTED: hypoth ( 399) 1162 267.3 5.8e-69 gi|110762664|ref|XP_393474.3| PREDICTED: similar t ( 958) 1075 248.3 7.2e-63 gi|193617811|ref|XP_001946352.1| PREDICTED: simila (1017) 1067 246.5 2.6e-62 gi|55960415|emb|CAI12124.1| ubiquitin specific pep ( 163) 1052 242.5 6.9e-62 gi|221106762|ref|XP_002154983.1| PREDICTED: simila ( 608) 994 230.1 1.3e-57 >>gi|74223408|dbj|BAE21579.1| unnamed protein product [M (1080 aa) initn: 3509 init1: 3509 opt: 3509 Z-score: 4206.7 bits: 789.1 E(): 0 Smith-Waterman score: 3509; 100.000% identity (100.000% similar) in 508 aa overlap (11-518:3-510) 10 20 30 40 50 60 mKIAA4 GQRWVLSAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVS :::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MVGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVS 10 20 30 40 50 70 80 90 100 110 120 mKIAA4 QEHIETAYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 QEHIETAYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRK 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA4 KNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 KNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTI 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA4 CEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 CEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPD 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA4 VRNVVQQQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VRNVVQQQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEG 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA4 DNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 DNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDME 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA4 PYVEHKGGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 PYVEHKGGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQL 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA4 GIEEDLEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 GIEEDLEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNS 420 430 440 450 460 470 490 500 510 520 mKIAA4 KFEEWCVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL :::::::::::::::::::::::::::::::::::::: gi|742 KFEEWCVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTK 480 490 500 510 520 530 gi|742 PIDNNACLCSHDKLHPDKISIMKRISEYAANIFYSRYGGGPRLTVKALCKDCVVERCRVL 540 550 560 570 580 590 >>gi|74141705|dbj|BAE38603.1| unnamed protein product [M (485 aa) initn: 3321 init1: 2696 opt: 3323 Z-score: 3987.8 bits: 747.4 E(): 2e-213 Smith-Waterman score: 3323; 99.794% identity (99.794% similar) in 485 aa overlap (37-520:1-485) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|741 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 -EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 AEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW 400 410 420 430 440 450 490 500 510 520 mKIAA4 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL ::::::::::::::::::::::::::::::::::: gi|741 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL 460 470 480 >>gi|115311888|sp|Q3V0C5.2|UBP48_MOUSE RecName: Full=Ubi (1052 aa) initn: 3322 init1: 3322 opt: 3322 Z-score: 3982.3 bits: 747.5 E(): 4.1e-213 Smith-Waterman score: 3322; 100.000% identity (100.000% similar) in 482 aa overlap (37-518:1-482) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|115 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEWC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEWC 400 410 420 430 440 450 490 500 510 520 mKIAA4 VEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL :::::::::::::::::::::::::::::::: gi|115 VEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNNA 460 470 480 490 500 510 gi|115 CLCSHDKLHPDKISIMKRISEYAANIFYSRYGGGPRLTVKALCKDCVVERCRVLRLKNQL 520 530 540 550 560 570 >>gi|123229431|emb|CAM19412.1| ubiquitin specific protea (631 aa) initn: 3308 init1: 2696 opt: 3310 Z-score: 3970.8 bits: 744.6 E(): 1.8e-212 Smith-Waterman score: 3310; 99.793% identity (99.793% similar) in 483 aa overlap (37-518:1-483) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|123 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 -EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 AEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW 400 410 420 430 440 450 490 500 510 520 mKIAA4 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL ::::::::::::::::::::::::::::::::: gi|123 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNN 460 470 480 490 500 510 gi|123 ACLCSHDKLHPDKISIMKRISEYAANIFYSRYGGGPRLTVKALCKDCVVERCRVLRLKNQ 520 530 540 550 560 570 >>gi|123229432|emb|CAM19413.1| ubiquitin specific protea (1036 aa) initn: 3308 init1: 2696 opt: 3310 Z-score: 3968.0 bits: 744.8 E(): 2.6e-212 Smith-Waterman score: 3310; 99.793% identity (99.793% similar) in 483 aa overlap (37-518:1-483) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|123 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 -EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 AEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW 400 410 420 430 440 450 490 500 510 520 mKIAA4 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL ::::::::::::::::::::::::::::::::: gi|123 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNN 460 470 480 490 500 510 gi|123 ACLCSHDKLHPDKISIMKRISEYAANIFYSRYGGGPRLTVKALCKDCVVERCRVLRLKNQ 520 530 540 550 560 570 >>gi|81870938|sp|Q76LT8.1|UBP48_RAT RecName: Full=Ubiqui (1036 aa) initn: 3259 init1: 2658 opt: 3261 Z-score: 3909.1 bits: 733.9 E(): 4.9e-209 Smith-Waterman score: 3261; 97.930% identity (99.586% similar) in 483 aa overlap (37-518:1-483) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|818 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|818 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY ::::::.::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|818 LTNLGASCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIRGGKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|818 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQESSKLFMSLLEDTLSKQKNPDVRNVVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|818 QQFCGEYAYVTVCSQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|818 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGDWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 -EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|818 TEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKNHTMVQVPAFLQELVDRDNSKFEEW 400 410 420 430 440 450 490 500 510 520 mKIAA4 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL ::::::::.::::::.::::::::::::::::: gi|818 CVEMAEMRRQSVDKGRAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNN 460 470 480 490 500 510 gi|818 ACLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKDCVVERCRILRLKNQ 520 530 540 550 560 570 >>gi|73950261|ref|XP_866736.1| PREDICTED: similar to ubi (485 aa) initn: 3210 init1: 2617 opt: 3212 Z-score: 3854.6 bits: 722.7 E(): 5.4e-206 Smith-Waterman score: 3212; 96.082% identity (98.351% similar) in 485 aa overlap (37-520:1-485) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|739 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG ::::::::::::::::::.::::::::::::::::::::::::.:::::::::::::::: gi|739 AYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY ::::::::::::::::::::::::::::::::::::: ::::. :::::::::::::: gi|739 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMMGDGIQEEKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|739 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC ::::::::::::::::::::::.:::::::::::::::::::::::::::.::::::::: gi|739 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK ::::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: gi|739 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 -EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW ::::::::::::::::::::::::::::::.::: .: ::::::::::::::::::::: gi|739 AEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEW 400 410 420 430 440 450 490 500 510 520 mKIAA4 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL :.::::::::::::::::::::::::::::::::: gi|739 CIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL 460 470 480 >>gi|76257392|ref|NP_001027902.1| ubiquitin specific pro (485 aa) initn: 3209 init1: 2616 opt: 3211 Z-score: 3853.4 bits: 722.5 E(): 6.3e-206 Smith-Waterman score: 3211; 96.082% identity (98.351% similar) in 485 aa overlap (37-520:1-485) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|762 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG ::::::::::::::::::.::::::::::::::::::::::::.:::::::::::::::: gi|762 AYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY ::::::::::::::::::::::::::::::::::::: ::::. :::::::::::::: gi|762 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|762 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC ::::::::::::::::::::::.:::::::::::::::::::::::::::.::::::::: gi|762 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK ::::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: gi|762 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|762 GGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 -EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW ::::::::::::::::::::::::::::::.::: .: ::::::::::::::::::::: gi|762 AEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEW 400 410 420 430 440 450 490 500 510 520 mKIAA4 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL :.::::::::::::::::::::::::::::::::: gi|762 CIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL 460 470 480 >>gi|219520976|gb|AAI43355.1| USP48 protein [Homo sapien (1047 aa) initn: 3210 init1: 3210 opt: 3210 Z-score: 3847.9 bits: 722.6 E(): 1.3e-205 Smith-Waterman score: 3210; 96.266% identity (98.548% similar) in 482 aa overlap (37-518:1-482) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|219 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG ::::::::::::::::::.::::::::::::::::::::::::.:::::::::::::::: gi|219 AYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY ::::::::::::::::::::::::::::::::::::: ::::. :::::::::::::: gi|219 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|219 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC ::::::::::::::::::::::.:::::::::::::::::::::::::::.::::::::: gi|219 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK ::::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: gi|219 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 GGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEWC ::::::::::::::::::::::::::::::.::: .: :::::::::::::::::::::: gi|219 EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWC 400 410 420 430 440 450 490 500 510 520 mKIAA4 VEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL .::::::::::::::::::::::::::::::: gi|219 IEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNHA 460 470 480 490 500 510 gi|219 CLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKECVVERCRILRLKNQL 520 530 540 550 560 570 >>gi|194207925|ref|XP_001504346.2| PREDICTED: ubiquitin (485 aa) initn: 3204 init1: 2617 opt: 3206 Z-score: 3847.4 bits: 721.4 E(): 1.4e-205 Smith-Waterman score: 3206; 95.876% identity (98.351% similar) in 485 aa overlap (37-520:1-485) 10 20 30 40 50 60 mKIAA4 SAGRGPCPFGRRRRRRRRPPGSASATSVKAMAPRLQLEKAAWRWAETVRPEEVSQEHIET :::::::::::::::::::::::::::::: gi|194 MAPRLQLEKAAWRWAETVRPEEVSQEHIET 10 20 30 70 80 90 100 110 120 mKIAA4 AYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVG ::::::::::::::::::.::::::::::::::::::::::::.:::::::::::::::: gi|194 AYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVG 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQY ::::::::::::::::::::::::::::::::::::: ::::. :::::::::::::: gi|194 LTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMMGDGIQEEKDYEPQTICEHLQY 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA4 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|194 LFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQ 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA4 QQFCGEYAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFC ::::::::::::::::::::::.:::::::::::::::::::::::::::.::::::::: gi|194 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA4 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHK ::::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: gi|194 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHK 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA4 GGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA4 -EPSKSQTRKPKCGKGTHCSRNAYMLVYRLQAQEKNHTMVQVPAFLQELVDRDNSKFEEW ::::::::::::::::::::::::::::::.::: .: :::::::::::.::::::::: gi|194 AEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVERDNSKFEEW 400 410 420 430 440 450 490 500 510 520 mKIAA4 CVEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL :.::::::::::::::::::::::::::::::::: gi|194 CIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAGL 460 470 480 520 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Wed Mar 18 01:50:47 2009 done: Wed Mar 18 01:57:50 2009 Total Scan time: 948.190 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]