FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4024.ptfa, 188 aa
 vs ./tmplib.26680 library

1768829 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.6842+/-0.00321; mu= 15.0406+/- 0.215
 mean_var=54.7682+/-12.609, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1733

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0193  ( 439 res)   mbg19457                   ( 439)  743  194 9.6e-51


>>mKIAA0193  ( 439 res)   mbg19457                        (439 aa)
 initn: 598 init1: 487 opt: 743  Z-score: 1003.4  bits: 193.6 E(): 9.6e-51
Smith-Waterman score: 743;  62.712% identity (64.162% ungapped) in 177 aa overlap (7-180:34-209)

                                       10        20        30      
mKIAA4                         EPYSCDTFVALPPATVGNRVIFGKNSDRLFDEVQEV
                                     .:::::: .  . :.::::: :  ::::::
mKIAA0 RPQLRSRSISTVGPGWSRLLGRMSGAPPSYSFVALPPRAKDGLVVFGKNSARPRDEVQEV
            10        20        30        40        50        60   

         40        50        60        70        80        90      
mKIAA4 IYCPAAVHNDLEKRLKCTYIEVDQVPETYAVVLSRPAWLWGAEMGANEHGVCIGNEAVWG
       .: ::. : : :....:::: .::::.:.:.:.::::::::::::::::::::.:::. .
mKIAA0 VYFPAVDH-DAESKVECTYISIDQVPRTHAIVISRPAWLWGAEMGANEHGVCIANEAINA
            70         80        90       100       110       120  

        100       110       120       130       140         150    
mKIAA4 REDISKEEALLGMDLVRLGLERADTAEKALDVIVDLLEKYGQGGNCAEGKE--FSYYNSF
       ::  .. :::::::::::::::. ::..:::.::.::...:::::  :  .   :. ...
mKIAA0 REPAAETEALLGMDLVRLGLERGTTAKEALDIIVSLLDEHGQGGNYYEDAHSCHSFQSAY
            130       140       150       160       170       180  

          160       170        180                                 
mKIAA4 LIADRNEAWILETSGKYWAAERV-QGVNSYLQFGS                         
       :..::.:::.::: ::::::::. .::                                 
mKIAA0 LLVDRDEAWVLETVGKYWAAERITEGVRCICNHLSLATKLDEEHPELRTYAQSQGWWTGD
            190       200       210       220       230       240  




188 residues in 1 query   sequences
1768829 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:31 2006 done: Mon Mar 27 10:59:32 2006
 Scan time:  0.410 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]