FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4250.ptfa, 239 aa vs ./tmplib.26680 library 1768778 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.6708+/-0.00382; mu= 19.0028+/- 0.257 mean_var=77.2100+/-17.655, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1460 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1317 ( 418 res) mbp02166 ( 418) 209 53 2.8e-08 mKIAA1044 ( 636 res) mbg01522 ( 636) 156 42 8e-05 mKIAA1144 ( 512 res) mfj54204 ( 512) 128 36 0.0042 >>mKIAA1317 ( 418 res) mbp02166 (418 aa) initn: 148 init1: 101 opt: 209 Z-score: 241.0 bits: 52.8 E(): 2.8e-08 Smith-Waterman score: 209; 34.906% identity (35.922% ungapped) in 106 aa overlap (41-143:8-113) 20 30 40 50 60 70 mKIAA4 CELLPPAPSGLGAGLGGGLCRRCSAGMGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRD : :.. . ..::::: ..: ..:: mKIAA1 YYPRDQGAAVPNSFPEVIELNVGGQVYFTRHSTLISI 10 20 30 80 90 100 110 120 mKIAA4 PKSFLYRLCQADPDLDSD--KDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVL :.:.:... . : .: :: : ..:::: : .:.::: ..:. . :.: : mKIAA1 PHSLLWKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPERGRL 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA4 E-EAEFYNITSLIKLVKDKIRERDSRISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE . :::.... .:.::. mKIAA1 KREAEYFQLPDLVKLLAPEDVKQSPDEFCHSDFEDASQGSDTRICPPSSLLPHDRKWGFI 100 110 120 130 140 150 >>mKIAA1044 ( 636 res) mbg01522 (636 aa) initn: 183 init1: 94 opt: 156 Z-score: 178.9 bits: 41.9 E(): 8e-05 Smith-Waterman score: 156; 29.114% identity (33.824% ungapped) in 158 aa overlap (15-154:1-154) 10 20 30 40 mKIAA4 GLVRIMAENHCELLPPAPSGLGAGLGGGL--CRRCSAGMGALAQRPGGV----------S :: :....::... : : . : .:. : . . mKIAA1 PPLPDNMAAGVAAWLPFARAAAIGWMPVASGPMPAPPRQERKRTQD 10 20 30 40 50 60 70 80 90 100 mKIAA4 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVL . :::.:: : : ..:: : : ..: ... :. . :: :..:::: : .: mKIAA1 ALIVLNVSGTRFQTWQDTLERYPDTLLG---SSERDF-FYHPETQQYFFDRDPDIFRHIL 50 60 70 80 90 100 110 120 130 140 150 160 mKIAA4 NYLRHGKLVINKDLAEEGVLEEAEFYNITSLI------KLVKDKIRERDSRISQMPVKHV :. : ::: . . :: :... : . ::. :: :.. mKIAA1 NFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAERLQDDADTDN 110 120 130 140 150 160 170 180 190 200 210 220 mKIAA4 YRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTT mKIAA1 TGESALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVPCGSSPGHI 170 180 190 200 210 220 >>mKIAA1144 ( 512 res) mfj54204 (512 aa) initn: 112 init1: 63 opt: 128 Z-score: 148.0 bits: 35.9 E(): 0.0042 Smith-Waterman score: 128; 32.609% identity (34.884% ungapped) in 92 aa overlap (51-136:54-145) 30 40 50 60 70 mKIAA4 LGAGLGGGLCRRCSAGMGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRL-- .:.:::: .:: : :.. : :: mKIAA1 APARRGRLGISSMTRQSLWDVSDTDVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL 30 40 50 60 70 80 80 90 100 110 120 130 mKIAA4 C---QADPDLDSDKDETG-AYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFY : .: .: .: :.. . .::.: : ::.. . ::: . .: . .: :.. mKIAA1 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW 90 100 110 120 130 140 140 150 160 170 180 190 mKIAA4 NITSLIKLVKDKIRERDSRISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGS .:. mKIAA1 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN 150 160 170 180 190 200 239 residues in 1 query sequences 1768778 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:06:27 2006 done: Mon Mar 27 11:06:28 2006 Scan time: 0.480 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]