FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA4250.ptfa, 239 aa
vs ./tmplib.26680 library
1768778 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 3.6708+/-0.00382; mu= 19.0028+/- 0.257
mean_var=77.2100+/-17.655, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36
Lambda= 0.1460
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA1317 ( 418 res) mbp02166 ( 418) 209 53 2.8e-08
mKIAA1044 ( 636 res) mbg01522 ( 636) 156 42 8e-05
mKIAA1144 ( 512 res) mfj54204 ( 512) 128 36 0.0042
>>mKIAA1317 ( 418 res) mbp02166 (418 aa)
initn: 148 init1: 101 opt: 209 Z-score: 241.0 bits: 52.8 E(): 2.8e-08
Smith-Waterman score: 209; 34.906% identity (35.922% ungapped) in 106 aa overlap (41-143:8-113)
20 30 40 50 60 70
mKIAA4 CELLPPAPSGLGAGLGGGLCRRCSAGMGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRD
: :.. . ..::::: ..: ..::
mKIAA1 YYPRDQGAAVPNSFPEVIELNVGGQVYFTRHSTLISI
10 20 30
80 90 100 110 120
mKIAA4 PKSFLYRLCQADPDLDSD--KDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVL
:.:.:... . : .: :: : ..:::: : .:.::: ..:. . :.: :
mKIAA1 PHSLLWKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPERGRL
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA4 E-EAEFYNITSLIKLVKDKIRERDSRISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE
. :::.... .:.::.
mKIAA1 KREAEYFQLPDLVKLLAPEDVKQSPDEFCHSDFEDASQGSDTRICPPSSLLPHDRKWGFI
100 110 120 130 140 150
>>mKIAA1044 ( 636 res) mbg01522 (636 aa)
initn: 183 init1: 94 opt: 156 Z-score: 178.9 bits: 41.9 E(): 8e-05
Smith-Waterman score: 156; 29.114% identity (33.824% ungapped) in 158 aa overlap (15-154:1-154)
10 20 30 40
mKIAA4 GLVRIMAENHCELLPPAPSGLGAGLGGGL--CRRCSAGMGALAQRPGGV----------S
:: :....::... : : . : .:. : . .
mKIAA1 PPLPDNMAAGVAAWLPFARAAAIGWMPVASGPMPAPPRQERKRTQD
10 20 30 40
50 60 70 80 90 100
mKIAA4 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVL
. :::.:: : : ..:: : : ..: ... :. . :: :..:::: : .:
mKIAA1 ALIVLNVSGTRFQTWQDTLERYPDTLLG---SSERDF-FYHPETQQYFFDRDPDIFRHIL
50 60 70 80 90 100
110 120 130 140 150 160
mKIAA4 NYLRHGKLVINKDLAEEGVLEEAEFYNITSLI------KLVKDKIRERDSRISQMPVKHV
:. : ::: . . :: :... : . ::. :: :..
mKIAA1 NFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAERLQDDADTDN
110 120 130 140 150 160
170 180 190 200 210 220
mKIAA4 YRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTT
mKIAA1 TGESALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVPCGSSPGHI
170 180 190 200 210 220
>>mKIAA1144 ( 512 res) mfj54204 (512 aa)
initn: 112 init1: 63 opt: 128 Z-score: 148.0 bits: 35.9 E(): 0.0042
Smith-Waterman score: 128; 32.609% identity (34.884% ungapped) in 92 aa overlap (51-136:54-145)
30 40 50 60 70
mKIAA4 LGAGLGGGLCRRCSAGMGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRL--
.:.:::: .:: : :.. : ::
mKIAA1 APARRGRLGISSMTRQSLWDVSDTDVEDGEIRINVGGFKRRLRSHTLLRFPETRLGRLLL
30 40 50 60 70 80
80 90 100 110 120 130
mKIAA4 C---QADPDLDSDKDETG-AYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFY
: .: .: .: :.. . .::.: : ::.. . ::: . .: . .: :..
mKIAA1 CHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTGKLHVMAELCVFSFSQEIEYW
90 100 110 120 130 140
140 150 160 170 180 190
mKIAA4 NITSLIKLVKDKIRERDSRISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGS
.:.
mKIAA1 GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDASKFDGQPLGN
150 160 170 180 190 200
239 residues in 1 query sequences
1768778 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 11:06:27 2006 done: Mon Mar 27 11:06:28 2006
Scan time: 0.480 Display time: 0.010
Function used was FASTA [version 3.4t11 Apr 17, 2002]