# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mpj00185.fasta.nr -Q ../query/mKIAA1182.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1182, 520 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921329 sequences Expectation_n fit: rho(ln(x))= 5.1184+/-0.000184; mu= 11.8663+/- 0.010 mean_var=69.7612+/-13.564, 0's: 32 Z-trim: 33 B-trim: 0 in 0/66 Lambda= 0.153556 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|38372348|sp|Q8C4Y3.2|NELFB_MOUSE RecName: Full= ( 580) 3392 760.6 0 gi|149039415|gb|EDL93635.1| similar to cofactor of ( 580) 3352 751.8 1.2e-214 gi|38372378|sp|Q8WX92.1|NELFB_HUMAN RecName: Full= ( 580) 3286 737.2 3e-210 gi|194681204|ref|XP_590381.4| PREDICTED: cofactor ( 800) 3262 731.9 1.5e-208 gi|73967426|ref|XP_548351.2| PREDICTED: similar to ( 580) 3237 726.3 5.5e-207 gi|126302653|ref|XP_001366988.1| PREDICTED: simila ( 580) 3128 702.2 1e-199 gi|194226092|ref|XP_001917565.1| PREDICTED: simila ( 530) 3122 700.8 2.4e-199 gi|13435819|gb|AAH04762.1| Cobra1 protein [Mus mus ( 475) 3117 699.7 4.7e-199 gi|133777873|gb|AAI14765.1| COBRA1 protein [Bos ta ( 496) 3112 698.6 1.1e-198 gi|7670478|dbj|BAA95090.1| unnamed protein product ( 475) 3109 697.9 1.6e-198 gi|149039414|gb|EDL93634.1| similar to cofactor of ( 475) 3077 690.8 2.2e-196 gi|73967430|ref|XP_855961.1| PREDICTED: similar to ( 581) 3045 683.8 3.5e-194 gi|15080250|gb|AAH11892.1| COBRA1 protein [Homo sa ( 475) 3011 676.2 5.5e-192 gi|10434169|dbj|BAB14157.1| unnamed protein produc ( 475) 3007 675.3 1e-191 gi|53129399|emb|CAG31384.1| hypothetical protein [ ( 577) 3006 675.1 1.4e-191 gi|109109650|ref|XP_001087434.1| PREDICTED: simila ( 579) 2817 633.3 5.6e-179 gi|56970601|gb|AAH88538.1| Hypothetical LOC496936 ( 576) 2780 625.1 1.6e-176 gi|80477195|gb|AAI08579.1| MGC131073 protein [Xeno ( 577) 2757 620.0 5.6e-175 gi|28279580|gb|AAH45409.1| Cofactor of BRCA1 [Dani ( 583) 2651 596.5 6.6e-168 gi|37606201|emb|CAE49092.1| novel protein similar ( 577) 2615 588.5 1.7e-165 gi|109109652|ref|XP_001087313.1| PREDICTED: simila ( 474) 2542 572.3 1e-160 gi|52545519|emb|CAB43381.3| hypothetical protein [ ( 398) 2506 564.2 2.3e-158 gi|37362200|gb|AAQ91228.1| cofactor of BRCA2 [Dani ( 594) 2426 546.6 6.8e-153 gi|73967424|ref|XP_848314.1| PREDICTED: similar to ( 985) 2261 510.2 1e-141 gi|210087090|gb|EEA35481.1| hypothetical protein B ( 585) 1975 446.7 8e-123 gi|47213281|emb|CAF92133.1| unnamed protein produc ( 850) 1961 443.7 9.2e-122 gi|224073055|ref|XP_002191871.1| PREDICTED: cofact ( 542) 1893 428.5 2.2e-117 gi|115751648|ref|XP_781074.2| PREDICTED: hypotheti ( 640) 1873 424.2 5.5e-116 gi|108868768|gb|EAT32993.1| conserved hypothetical ( 588) 1845 417.9 3.8e-114 gi|212507704|gb|EEB11566.1| conserved hypothetical ( 574) 1843 417.5 5e-114 gi|157013201|gb|EAA00225.3| AGAP012109-PA [Anophel ( 566) 1839 416.6 9.2e-114 gi|167873859|gb|EDS37242.1| negative elongation fa ( 590) 1823 413.1 1.1e-112 gi|91078954|ref|XP_974170.1| PREDICTED: similar to ( 587) 1809 410.0 9.5e-112 gi|193627464|ref|XP_001951169.1| PREDICTED: simila ( 590) 1800 408.0 3.8e-111 gi|190650208|gb|EDV47486.1| GG17612 [Drosophila er ( 592) 1777 402.9 1.3e-109 gi|190618628|gb|EDV34152.1| GF21119 [Drosophila an ( 591) 1771 401.5 3.3e-109 gi|194127345|gb|EDW49388.1| GM17461 [Drosophila se ( 592) 1767 400.6 6e-109 gi|193907051|gb|EDW05918.1| GI16340 [Drosophila mo ( 587) 1766 400.4 7e-109 gi|38372398|sp|Q9Y113.1|NELFB_DROME RecName: Full= ( 594) 1766 400.4 7e-109 gi|193893907|gb|EDV92773.1| GH18941 [Drosophila gr ( 592) 1763 399.8 1.1e-108 gi|193901063|gb|EDV99929.1| GH12128 [Drosophila gr ( 598) 1761 399.3 1.5e-108 gi|194151975|gb|EDW67409.1| GJ24126 [Drosophila vi ( 592) 1757 398.4 2.8e-108 gi|193915452|gb|EDW14319.1| GI24199 [Drosophila mo ( 595) 1755 398.0 3.8e-108 gi|194104746|gb|EDW26789.1| GL14601 [Drosophila pe ( 590) 1753 397.5 5.2e-108 gi|54643467|gb|EAL32211.1| GA17103 [Drosophila pse ( 590) 1752 397.3 6e-108 gi|194188770|gb|EDX02354.1| GE17513 [Drosophila ya ( 595) 1752 397.3 6e-108 gi|194150521|gb|EDW66205.1| GJ15676 [Drosophila vi ( 631) 1745 395.8 1.9e-107 gi|119608784|gb|EAW88378.1| cofactor of BRCA1, iso ( 290) 1728 391.8 1.4e-106 gi|119608783|gb|EAW88377.1| cofactor of BRCA1, iso ( 278) 1710 387.8 2.1e-105 gi|73967428|ref|XP_855920.1| PREDICTED: similar to ( 278) 1660 376.7 4.5e-102 >>gi|38372348|sp|Q8C4Y3.2|NELFB_MOUSE RecName: Full=Nega (580 aa) initn: 3392 init1: 3392 opt: 3392 Z-score: 4057.9 bits: 760.6 E(): 0 Smith-Waterman score: 3392; 100.000% identity (100.000% similar) in 520 aa overlap (1-520:61-580) 10 20 30 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERY :::::::::::::::::::::::::::::: gi|383 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERY 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA1 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA1 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA1 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET 280 290 300 310 320 330 280 290 300 310 320 330 mKIAA1 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVD 340 350 360 370 380 390 340 350 360 370 380 390 mKIAA1 QKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 QKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE 400 410 420 430 440 450 400 410 420 430 440 450 mKIAA1 TFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 TFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLH 460 470 480 490 500 510 460 470 480 490 500 510 mKIAA1 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLP 520 530 540 550 560 570 520 mKIAA1 LPSVPAPATL :::::::::: gi|383 LPSVPAPATL 580 >>gi|149039415|gb|EDL93635.1| similar to cofactor of BRC (580 aa) initn: 3352 init1: 3352 opt: 3352 Z-score: 4010.1 bits: 751.8 E(): 1.2e-214 Smith-Waterman score: 3352; 98.462% identity (99.615% similar) in 520 aa overlap (1-520:61-580) 10 20 30 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERY :::::::::::::::::::::::::::::: gi|149 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERY 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA1 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA1 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA1 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET 280 290 300 310 320 330 280 290 300 310 320 330 mKIAA1 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVD :::::::::::::::::::::::::::::::::::::::::::::::::.::::.::::: gi|149 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSFVVDDYTFNVD 340 350 360 370 380 390 340 350 360 370 380 390 mKIAA1 QKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 QKLPAEEKAPVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE 400 410 420 430 440 450 400 410 420 430 440 450 mKIAA1 TFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLH :::::::::::::::::::.:::::::::::::::::::::::::::.:::::::::::: gi|149 TFGDLAFSDIFLHLLTGSLALLADEFALEDFCSSLFDGFFLTASPRKDNVHRHVLRLLLH 460 470 480 490 500 510 460 470 480 490 500 510 mKIAA1 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLP :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::.:: gi|149 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPPQAAETPALELP 520 530 540 550 560 570 520 mKIAA1 LPSVPAPATL ::::::::.: gi|149 LPSVPAPAAL 580 >>gi|38372378|sp|Q8WX92.1|NELFB_HUMAN RecName: Full=Nega (580 aa) initn: 3309 init1: 3286 opt: 3286 Z-score: 3931.0 bits: 737.2 E(): 3e-210 Smith-Waterman score: 3286; 95.385% identity (99.423% similar) in 520 aa overlap (1-520:61-580) 10 20 30 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERY :::::::::::::::::::::::::::::: gi|383 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERY 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|383 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA1 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK ::::::::::::::::::::::::::::::::::::::::::::::::::::.::.:::: gi|383 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQRLTRMVGK 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA1 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI ::::::::::::::::::::::::::::::::::::::::..:::::::::::::::::: gi|383 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVGEICTVDPCHKFTWCLDACI 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA1 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET ::::::::::::::::::::::::::::::::::::::::::::.:::.:::::::.::: gi|383 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQELVGQET 280 290 300 310 320 330 280 290 300 310 320 330 mKIAA1 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVD :::::::::::::::::::::::.::::::::::::.::::.:::::::..:::.::::: gi|383 LPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFLVDDYTFNVD 340 350 360 370 380 390 340 350 360 370 380 390 mKIAA1 QKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE ::::::::: :.:::::::::::::::::::::::::::::::::::::::::::::::: gi|383 QKLPAEEKAPVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE 400 410 420 430 440 450 400 410 420 430 440 450 mKIAA1 TFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLH :::::::.:::::::::.:.:::::::::::::::::::::::::::::::::.::::.: gi|383 TFGDLAFGDIFLHLLTGNLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHALRLLIH 460 470 480 490 500 510 460 470 480 490 500 510 mKIAA1 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLP :: :::::::::::::::::::::::::::::::::::::::::::::.::::::::.:: gi|383 LHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPAQAAETPALELP 520 530 540 550 560 570 520 mKIAA1 LPSVPAPATL :::::::: : gi|383 LPSVPAPAPL 580 >>gi|194681204|ref|XP_590381.4| PREDICTED: cofactor of B (800 aa) initn: 3262 init1: 3262 opt: 3262 Z-score: 3900.3 bits: 731.9 E(): 1.5e-208 Smith-Waterman score: 3262; 94.808% identity (99.231% similar) in 520 aa overlap (1-520:281-800) 10 20 30 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERY :::::::::::::::::::::::::::::: gi|194 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERY 260 270 280 290 300 310 40 50 60 70 80 90 mKIAA1 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW 320 330 340 350 360 370 100 110 120 130 140 150 mKIAA1 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK :::::::::::::::::::.::::::::::::::::::::::::::::::::.::.:::. gi|194 QDNQALFGDEVSPLLKQYIVEKESALFSTELSVLHNFFSPSPKTRRQGEVVQRLTRMVGR 380 390 400 410 420 430 160 170 180 190 200 210 mKIAA1 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI ::::::::::::::::::::::::::::::::::::::::.:::.::::::::::::::: gi|194 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVGDICSVDPCHKFTWCLDACI 440 450 460 470 480 490 220 230 240 250 260 270 mKIAA1 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::.::. gi|194 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTVRHLQELVGQEV 500 510 520 530 540 550 280 290 300 310 320 330 mKIAA1 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVD :::::::::::::::::::::::.::::::::::::.::.:.:::::::.:::: ::::: gi|194 LPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELVTRFLPMLMSFVVDDHTFNVD 560 570 580 590 600 610 340 350 360 370 380 390 mKIAA1 QKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QKLPAEEKAPVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE 620 630 640 650 660 670 400 410 420 430 440 450 mKIAA1 TFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLH :::::::.:::::::::::.:::::::::::::::::::.::::::::.:.::::::::: gi|194 TFGDLAFGDIFLHLLTGSLALLADEFALEDFCSSLFDGFLLTASPRKESVQRHVLRLLLH 680 690 700 710 720 730 460 470 480 490 500 510 mKIAA1 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLP :: :::::::::::::::::::::::::::::::::::::::::::::.:: :::::.:: gi|194 LHHRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPAQAPETPALELP 740 750 760 770 780 790 520 mKIAA1 LPSVPAPATL ::.:::::.: gi|194 LPAVPAPAVL 800 >>gi|73967426|ref|XP_548351.2| PREDICTED: similar to cof (580 aa) initn: 3237 init1: 3237 opt: 3237 Z-score: 3872.4 bits: 726.3 E(): 5.5e-207 Smith-Waterman score: 3237; 94.423% identity (98.654% similar) in 520 aa overlap (1-520:61-580) 10 20 30 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERY :::::::::::::::::::::::::::::: gi|739 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERY 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA1 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|739 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKARRQGEVVQKLTQMVGK 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA1 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI ::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::::::: gi|739 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHELDVGDICSVDPCHKFTWCLDACI 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA1 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::.::: gi|739 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTVRHLQELVGQET 280 290 300 310 320 330 280 290 300 310 320 330 mKIAA1 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVD :::::::::::::::::::::::.::::::::::::.::::.:::::::.:::: ::::: gi|739 LPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFVVDDHTFNVD 340 350 360 370 380 390 340 350 360 370 380 390 mKIAA1 QKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QKLPAEEKAPVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE 400 410 420 430 440 450 400 410 420 430 440 450 mKIAA1 TFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLH :::::::.::::::: :.:.:::::::::::: ::::::.::::::::::.:::::::.: gi|739 TFGDLAFGDIFLHLLMGNLALLADEFALEDFCRSLFDGFLLTASPRKENVQRHVLRLLIH 460 470 480 490 500 510 460 470 480 490 500 510 mKIAA1 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLP :: ::::::::::.:::::::::::::::::::::::::::.::::::.::::::::.:: gi|739 LHHRVAPSKLEALRKALEPTGQSGEAVKELYSQLGEKLEQLEHRKPSPAQAAETPALELP 520 530 540 550 560 570 520 mKIAA1 LPSVPAPATL ::.: .:: : gi|739 LPTVSTPAGL 580 >>gi|126302653|ref|XP_001366988.1| PREDICTED: similar to (580 aa) initn: 3157 init1: 3128 opt: 3128 Z-score: 3741.9 bits: 702.2 E(): 1e-199 Smith-Waterman score: 3128; 89.615% identity (98.269% similar) in 520 aa overlap (1-520:61-580) 10 20 30 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERY :::::::::::::::::::::.:::.:::: gi|126 EQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIATEGKVEERY 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIW 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA1 QDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGK :::::::::::::::::::::::. :::.:.::::::::::::::::::::::::::.:: gi|126 QDNQALFGDEVSPLLKQYILEKENILFSNEVSVLHNFFSPSPKTRRQGEVVQKLTQMIGK 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA1 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACI :::::::::::::::::::::::::::::::::::::::.:::: ::::::::::::::: gi|126 NVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDISDICMVDPCHKFTWCLDACI 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA1 RERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQET ::.:::.:::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|126 REKFVDNKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVGQET 280 290 300 310 320 330 280 290 300 310 320 330 mKIAA1 LPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVD :::.:::::::::.:.:::::::.:::::::::::::::::.:::::::.::::.::::: gi|126 LPRESPDLLLLLRMLSLGQGAWDMIDSQVFKEPKMEAELITRFLPMLMSFVVDDYTFNVD 340 350 360 370 380 390 340 350 360 370 380 390 mKIAA1 QKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVE ::::.:::: :::::::::::::::::.:::::.::::::::::::::::.::::::::: gi|126 QKLPTEEKAPVTYPNTLPESFTKFLQEHRMACEMGLYYVLHITKQRNKNAFLRLLPGLVE 400 410 420 430 440 450 400 410 420 430 440 450 mKIAA1 TFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLH :::::::::::::::::.:.:::::::.:.::.::::::::: :::::::::::::.: gi|126 TFGDLAFSDIFLHLLTGNLTLLADEFAVEEFCTSLFDGFFLTCLSRKENVHRHVLRLLIH 460 470 480 490 500 510 460 470 480 490 500 510 mKIAA1 LHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLP :: .:::.:::.:::.:::..:::::::.::.:::::::.:.: ::::.:..:.:::.:: gi|126 LHHKVAPTKLESLQKTLEPSSQSGEAVKDLYNQLGEKLEHLEHCKPSPAQVVEAPALELP 520 530 540 550 560 570 520 mKIAA1 LPSVPAPATL : .::.::.: gi|126 LSAVPTPAAL 580 >>gi|194226092|ref|XP_001917565.1| PREDICTED: similar to (530 aa) initn: 3122 init1: 3122 opt: 3122 Z-score: 3735.2 bits: 700.8 E(): 2.4e-199 Smith-Waterman score: 3122; 94.970% identity (98.994% similar) in 497 aa overlap (24-520:34-530) 10 20 30 40 50 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV :::::::::::::::::::::::::::::: gi|194 KGSRPSDPSVDVLRGFRSIPPSALRSSPRRGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 MCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 MCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKE 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 SALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 SALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVH 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 YCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKG :::::::::::::::::.:::.:::::::::::::::::::::::::::::::::::::: gi|194 YCTLRAELLMSLHDLDVGDICSVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKG 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 QEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWD :::::::::::::::::::::::::.:::::::.:::::::::::::::::::::::::: gi|194 QEQVLGDLSMILCDPFAINTLSLSTVRHLQELVGQETLPRDSPDLLLLLRLLALGQGAWD 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 LIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTK .::::::::::::.::::.::: :::.:::: :::::::::::::: ::::::::::::: gi|194 MIDSQVFKEPKMEVELITRFLPTLMSFVVDDHTFNVDQKLPAEEKAPVTYPNTLPESFTK 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 FLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLVLLA ::::::::::::::::::::::::::::::::::::::::::::.:::::::::.:.::: gi|194 FLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFGDIFLHLLTGNLALLA 370 380 390 400 410 420 420 430 440 450 460 470 mKIAA1 DEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQS ::::::::::::::::.::::::::::.:::::::.::: :::::::.:::::::::::: gi|194 DEFALEDFCSSLFDGFLLTASPRKENVQRHVLRLLVHLHHRVAPSKLQALQKALEPTGQS 430 440 450 460 470 480 480 490 500 510 520 mKIAA1 GEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALDLPLPSVPAPATL ::::::::::::::::::::.::::.:.::::::.::::.::::: : gi|194 GEAVKELYSQLGEKLEQLDHQKPSPAQTAETPALELPLPTVPAPAGL 490 500 510 520 530 >>gi|13435819|gb|AAH04762.1| Cobra1 protein [Mus musculu (475 aa) initn: 3117 init1: 3117 opt: 3117 Z-score: 3729.9 bits: 699.7 E(): 4.7e-199 Smith-Waterman score: 3117; 100.000% identity (100.000% similar) in 475 aa overlap (46-520:1-475) 20 30 40 50 60 70 mKIAA1 RVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADK :::::::::::::::::::::::::::::: gi|134 MPSLQPVVMCVMKHLPKVPEKKLKLVMADK 10 20 30 80 90 100 110 120 130 mKIAA1 ELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 ELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTR 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA1 RQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 RQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICT 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA1 VDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 VDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLS 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA1 LSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 LSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLP 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA1 MLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 MLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQ 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA1 RNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 RNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASP 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA1 RKENVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 RKENVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRK 400 410 420 430 440 450 500 510 520 mKIAA1 PSPTQAAETPALDLPLPSVPAPATL ::::::::::::::::::::::::: gi|134 PSPTQAAETPALDLPLPSVPAPATL 460 470 >>gi|133777873|gb|AAI14765.1| COBRA1 protein [Bos taurus (496 aa) initn: 3112 init1: 3112 opt: 3112 Z-score: 3723.7 bits: 698.6 E(): 1.1e-198 Smith-Waterman score: 3112; 94.556% identity (99.194% similar) in 496 aa overlap (25-520:1-496) 10 20 30 40 50 60 mKIAA1 FHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHL :::::::::::::::::::::::::::::::::::: gi|133 KAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHL 10 20 30 70 80 90 100 110 120 mKIAA1 PKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTE :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|133 PKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYIVEKESALFSTE 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 LSVLHNFFSPSPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAE ::::::::::::::::::::::.::.:::.:::::::::::::::::::::::::::::: gi|133 LSVLHNFFSPSPKTRRQGEVVQRLTRMVGRNVKLYDMVLQFLRTLFLRTRNVHYCTLRAE 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 LLMSLHDLDVSDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGD ::::::::::.:::.::::::::::::::::::::::::::::::::::::::::::::: gi|133 LLMSLHDLDVGDICSVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGD 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 LSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVF ::::::::::::::::::.:::::::.::.:::::::::::::::::::::::.:::::: gi|133 LSMILCDPFAINTLSLSTVRHLQELVGQEVLPRDSPDLLLLLRLLALGQGAWDMIDSQVF 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 KEPKMEAELITKFLPMLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTKFLQEQRM ::::::.::.:.:::::::.:::: :::::::::::::: :::::::::::::::::::: gi|133 KEPKMEVELVTRFLPMLMSFVVDDHTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRM 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLVLLADEFALED :::::::::::::::::::::::::::::::::::::.:::::::::::.:::::::::: gi|133 ACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFGDIFLHLLTGSLALLADEFALED 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 FCSSLFDGFFLTASPRKENVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQSGEAVKEL :::::::::.::::::::.:.::::::::::: ::::::::::::::::::::::::::: gi|133 FCSSLFDGFLLTASPRKESVQRHVLRLLLHLHHRVAPSKLEALQKALEPTGQSGEAVKEL 400 410 420 430 440 450 490 500 510 520 mKIAA1 YSQLGEKLEQLDHRKPSPTQAAETPALDLPLPSVPAPATL ::::::::::::::::::.:: :::::.::::.:::::.: gi|133 YSQLGEKLEQLDHRKPSPAQAPETPALELPLPAVPAPAVL 460 470 480 490 >>gi|7670478|dbj|BAA95090.1| unnamed protein product [Mu (475 aa) initn: 3109 init1: 3109 opt: 3109 Z-score: 3720.3 bits: 697.9 E(): 1.6e-198 Smith-Waterman score: 3109; 99.579% identity (100.000% similar) in 475 aa overlap (46-520:1-475) 20 30 40 50 60 70 mKIAA1 RVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADK :::::::::::::::::::::::::::::: gi|767 MPSLQPVVMCVMKHLPKVPEKKLKLVMADK 10 20 30 80 90 100 110 120 130 mKIAA1 ELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 ELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTR 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA1 RQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 RQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICT 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA1 VDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 VDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLS 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA1 LSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 LSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLP 220 230 240 250 260 270 320 330 340 350 360 370 mKIAA1 MLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 MLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQ 280 290 300 310 320 330 380 390 400 410 420 430 mKIAA1 RNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASP ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|767 RNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLALLADEFALEDFCSSLFDGFFLTASP 340 350 360 370 380 390 440 450 460 470 480 490 mKIAA1 RKENVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRK :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|767 RKENVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGERLEQLDHRK 400 410 420 430 440 450 500 510 520 mKIAA1 PSPTQAAETPALDLPLPSVPAPATL ::::::::::::::::::::::::: gi|767 PSPTQAAETPALDLPLPSVPAPATL 460 470 520 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 02:36:38 2009 done: Fri Mar 13 02:43:48 2009 Total Scan time: 961.430 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]