# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mph03708.fasta.nr -Q ../query/mKIAA1229.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1229, 167 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7916103 sequences Expectation_n fit: rho(ln(x))= 5.8709+/-0.000195; mu= 2.5168+/- 0.011 mean_var=119.1446+/-22.672, 0's: 37 Z-trim: 52 B-trim: 82 in 2/66 Lambda= 0.117500 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|18043255|gb|AAH20075.1| Odf2l protein [Mus musc ( 546) 1035 186.1 7.1e-45 gi|148680061|gb|EDL12008.1| outer dense fiber of s ( 555) 1035 186.1 7.1e-45 gi|12852604|dbj|BAB29473.1| unnamed protein produc ( 589) 1035 186.1 7.4e-45 gi|148680062|gb|EDL12009.1| outer dense fiber of s ( 589) 1035 186.1 7.4e-45 gi|81881381|sp|Q9D478.1|ODF2L_MOUSE RecName: Full= ( 642) 1035 186.1 7.9e-45 gi|149026150|gb|EDL82393.1| rCG28773, isoform CRA_ ( 589) 940 170.0 5.2e-40 gi|149026149|gb|EDL82392.1| rCG28773, isoform CRA_ ( 642) 940 170.0 5.6e-40 gi|122142383|sp|Q0VBY1.1|ODF2L_BOVIN RecName: Full ( 548) 909 164.7 1.9e-38 gi|67968574|dbj|BAE00647.1| unnamed protein produc ( 513) 893 162.0 1.2e-37 gi|55749708|ref|NP_001007023.1| outer dense fiber ( 513) 891 161.6 1.5e-37 gi|194381860|dbj|BAG64299.1| unnamed protein produ ( 591) 891 161.7 1.7e-37 gi|60551654|gb|AAH91490.1| ODF2L protein [Homo sap ( 620) 891 161.7 1.7e-37 gi|55749696|ref|NP_065780.1| outer dense fiber of ( 644) 891 161.7 1.8e-37 gi|119593594|gb|EAW73188.1| outer dense fiber of s ( 673) 891 161.7 1.8e-37 gi|119593597|gb|EAW73191.1| outer dense fiber of s ( 692) 891 161.8 1.9e-37 gi|73960099|ref|XP_547300.2| PREDICTED: similar to ( 644) 882 160.2 5.1e-37 gi|149709639|ref|XP_001494892.1| PREDICTED: outer ( 643) 873 158.7 1.5e-36 gi|194035793|ref|XP_001927557.1| PREDICTED: simila ( 416) 805 146.9 3.2e-33 gi|149612495|ref|XP_001515890.1| PREDICTED: simila ( 255) 716 131.6 7.9e-29 gi|194380854|dbj|BAG63995.1| unnamed protein produ ( 582) 674 124.9 1.9e-26 gi|56204222|emb|CAI23513.1| outer dense fiber of s ( 620) 674 124.9 2e-26 gi|160013283|sp|Q9ULJ1.2|ODF2L_HUMAN RecName: Full ( 636) 674 124.9 2.1e-26 gi|168269754|dbj|BAG10004.1| outer dense fiber of ( 636) 674 124.9 2.1e-26 gi|118094416|ref|XP_422361.2| PREDICTED: similar t ( 676) 500 95.5 1.6e-17 gi|109009635|ref|XP_001105301.1| PREDICTED: simila ( 606) 460 88.6 1.7e-15 gi|224057497|ref|XP_002191796.1| PREDICTED: simila ( 700) 454 87.7 3.7e-15 gi|224159506|ref|XP_002200012.1| PREDICTED: simila ( 213) 442 85.1 6.7e-15 gi|123884215|sp|Q08B20.1|ODF2L_XENLA RecName: Full ( 641) 437 84.8 2.6e-14 gi|189533720|ref|XP_001332564.2| PREDICTED: simila ( 831) 368 73.2 1e-10 gi|224073426|ref|XP_002194480.1| PREDICTED: outer ( 801) 361 72.0 2.3e-10 gi|40225329|gb|AAH12785.1| ODF2 protein [Homo sapi ( 174) 352 69.8 2.3e-10 gi|82082176|sp|Q5ZKK5.1|ODFP2_CHICK RecName: Full= ( 822) 360 71.8 2.6e-10 gi|194033664|ref|XP_001928746.1| PREDICTED: outer ( 445) 353 70.4 3.9e-10 gi|73967880|ref|XP_548436.2| PREDICTED: similar to ( 805) 354 70.8 5.2e-10 gi|73967888|ref|XP_850569.1| PREDICTED: similar to ( 824) 354 70.8 5.3e-10 gi|73967882|ref|XP_861685.1| PREDICTED: similar to ( 827) 354 70.8 5.3e-10 gi|109110158|ref|XP_001111169.1| PREDICTED: simila ( 622) 352 70.3 5.5e-10 gi|114626986|ref|XP_001157971.1| PREDICTED: outer ( 724) 352 70.4 6.1e-10 gi|114626984|ref|XP_001158140.1| PREDICTED: outer ( 747) 352 70.4 6.3e-10 gi|109110148|ref|XP_001111213.1| PREDICTED: simila ( 748) 352 70.4 6.3e-10 gi|109110150|ref|XP_001111323.1| PREDICTED: simila ( 763) 352 70.4 6.3e-10 gi|14714943|gb|AAH10629.1| Outer dense fiber of sp ( 763) 352 70.4 6.3e-10 gi|109110146|ref|XP_001111473.1| PREDICTED: simila ( 767) 352 70.4 6.4e-10 gi|114626974|ref|XP_001158300.1| PREDICTED: outer ( 805) 352 70.5 6.6e-10 gi|34485615|gb|AAQ73195.1| outer dense fiber of sp ( 805) 352 70.5 6.6e-10 gi|114626970|ref|XP_001158197.1| PREDICTED: outer ( 805) 352 70.5 6.6e-10 gi|190689987|gb|ACE86768.1| outer dense fiber of s ( 805) 352 70.5 6.6e-10 gi|109110140|ref|XP_001111549.1| PREDICTED: simila ( 805) 352 70.5 6.6e-10 gi|114626960|ref|XP_001158358.1| PREDICTED: outer ( 809) 352 70.5 6.6e-10 gi|119608206|gb|EAW87800.1| outer dense fiber of s ( 810) 352 70.5 6.6e-10 >>gi|18043255|gb|AAH20075.1| Odf2l protein [Mus musculus (546 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 962.0 bits: 186.1 E(): 7.1e-45 Smith-Waterman score: 1035; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:380-546) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :::::::::::::::::::::::::::::: gi|180 EAAEMVKSRCKNLLHENNLIITNKNKKLEKVDGNQSLLTKLSLEEENHLIQLKCENLKEK 350 360 370 380 390 400 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK 410 420 430 440 450 460 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES 470 480 490 500 510 520 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::::::::::: gi|180 IKNYLQFLQISYVTMFR 530 540 >>gi|148680061|gb|EDL12008.1| outer dense fiber of sperm (555 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 961.9 bits: 186.1 E(): 7.1e-45 Smith-Waterman score: 1035; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:389-555) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :::::::::::::::::::::::::::::: gi|148 EAAEMVKSRCKNLLHENNLIITNKNKKLEKVDGNQSLLTKLSLEEENHLIQLKCENLKEK 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK 420 430 440 450 460 470 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES 480 490 500 510 520 530 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::::::::::: gi|148 IKNYLQFLQISYVTMFR 540 550 >>gi|12852604|dbj|BAB29473.1| unnamed protein product [M (589 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 961.6 bits: 186.1 E(): 7.4e-45 Smith-Waterman score: 1035; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:423-589) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :::::::::::::::::::::::::::::: gi|128 EAAEMVKSRCKNLLHENNLIITNKNKKLEKVDGNQSLLTKLSLEEENHLIQLKCENLKEK 400 410 420 430 440 450 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK 460 470 480 490 500 510 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES 520 530 540 550 560 570 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::::::::::: gi|128 IKNYLQFLQISYVTMFR 580 >>gi|148680062|gb|EDL12009.1| outer dense fiber of sperm (589 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 961.6 bits: 186.1 E(): 7.4e-45 Smith-Waterman score: 1035; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:423-589) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :::::::::::::::::::::::::::::: gi|148 EAAEMVKSRCKNLLHENNLIITNKNKKLEKVDGNQSLLTKLSLEEENHLIQLKCENLKEK 400 410 420 430 440 450 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK 460 470 480 490 500 510 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES 520 530 540 550 560 570 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::::::::::: gi|148 IKNYLQFLQISYVTMFR 580 >>gi|81881381|sp|Q9D478.1|ODF2L_MOUSE RecName: Full=Oute (642 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 961.1 bits: 186.1 E(): 7.9e-45 Smith-Waterman score: 1035; 100.000% identity (100.000% similar) in 167 aa overlap (1-167:476-642) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :::::::::::::::::::::::::::::: gi|818 QRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENHLIQLKCENLKEK 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES 570 580 590 600 610 620 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::::::::::: gi|818 IKNYLQFLQISYVTMFR 630 640 >>gi|149026150|gb|EDL82393.1| rCG28773, isoform CRA_b [R (589 aa) initn: 940 init1: 940 opt: 940 Z-score: 874.6 bits: 170.0 E(): 5.2e-40 Smith-Waterman score: 940; 91.617% identity (96.407% similar) in 167 aa overlap (1-167:423-589) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :::: ::::::::::::::::::::::::: gi|149 EAAAMVKSRCKNLLHENKLIINKKNTKLEKVDGNYSLLTKLSLEEENHLIQLKCENLKEK 400 410 420 430 440 450 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK ::::::::::::.::::::: ::::::::.::::: :::::::::::::::::::::::: gi|149 LEQMDAENKELERKLADQEEFLKHSDLELREKAAECTALSRQLEAALEEGRQKVSEEVEK 460 470 480 490 500 510 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::.:: :::.::::::::::::: .:.::.::: :::::::::::::::.::: gi|149 MSSRERALQMKISDLETELRKKNEEQNQLVGNMSTKAQHQDICLKEIQHSLEKSETQNES 520 530 540 550 560 570 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::::::::::: gi|149 IKNYLQFLQISYVTMFR 580 >>gi|149026149|gb|EDL82392.1| rCG28773, isoform CRA_a [R (642 aa) initn: 940 init1: 940 opt: 940 Z-score: 874.1 bits: 170.0 E(): 5.6e-40 Smith-Waterman score: 940; 91.617% identity (96.407% similar) in 167 aa overlap (1-167:476-642) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :::: ::::::::::::::::::::::::: gi|149 QRLQECQENLQRCKEKCAEQALTIRELQGQVDGNYSLLTKLSLEEENHLIQLKCENLKEK 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK ::::::::::::.::::::: ::::::::.::::: :::::::::::::::::::::::: gi|149 LEQMDAENKELERKLADQEEFLKHSDLELREKAAECTALSRQLEAALEEGRQKVSEEVEK 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::.:: :::.::::::::::::: .:.::.::: :::::::::::::::.::: gi|149 MSSRERALQMKISDLETELRKKNEEQNQLVGNMSTKAQHQDICLKEIQHSLEKSETQNES 570 580 590 600 610 620 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::::::::::: gi|149 IKNYLQFLQISYVTMFR 630 640 >>gi|122142383|sp|Q0VBY1.1|ODF2L_BOVIN RecName: Full=Out (548 aa) initn: 909 init1: 909 opt: 909 Z-score: 846.5 bits: 164.7 E(): 1.9e-38 Smith-Waterman score: 909; 86.145% identity (96.988% similar) in 166 aa overlap (1-166:382-547) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK :: :.::::::::::::.::::::::::.: gi|122 EAAEMVKSRCKNLLQENSLITKNKNKKLKKVDENHSLLTKLSLEEENYLIQLKCENLKQK 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK ::::::::::::::::.::::::::.:..:::.::::::.:::::::::::::::::.:: gi|122 LEQMDAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQKVSEEIEK 420 430 440 450 460 470 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES :::::::::.::.::: ::::::::::::: :::.:.::: .:::::::::::::..::: gi|122 MSSRERALQVKIVDLENELRKKNEEQNQLVCKMNSKAQHQEVCLKEIQHSLEKSENQNES 480 490 500 510 520 530 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::. :::::: gi|122 IKNYLQFLKTSYVTMFG 540 >>gi|67968574|dbj|BAE00647.1| unnamed protein product [M (513 aa) initn: 893 init1: 893 opt: 893 Z-score: 832.2 bits: 162.0 E(): 1.2e-37 Smith-Waterman score: 893; 83.735% identity (98.193% similar) in 166 aa overlap (1-166:347-512) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK ::::.::::::::::::.:::::::::..: gi|679 RRLHECQESLQCCKGKCADQEHTVRELQGQVDGNHSLLTKLSLEEENYLIQLKCENLQQK 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK :::::.::::::::::.::::::::.:..:::.::::::.::::::::::::::.::.:: gi|679 LEQMDTENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQKVAEEIEK 380 390 400 410 420 430 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES ::::::.:::::::::.::::::::::::: ::..:.::: .::::.:.::::::..::: gi|679 MSSRERSLQIKILDLETELRKKNEEQNQLVCKMSSKAQHQEVCLKEVQNSLEKSENQNES 440 450 460 470 480 490 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::. :::::: gi|679 IKNYLQFLKTSYVTMFE 500 510 >>gi|55749708|ref|NP_001007023.1| outer dense fiber of s (513 aa) initn: 891 init1: 891 opt: 891 Z-score: 830.4 bits: 161.6 E(): 1.5e-37 Smith-Waterman score: 891; 84.337% identity (96.988% similar) in 166 aa overlap (1-166:347-512) 10 20 30 mKIAA1 VDGNQSLLTKLSLEEENHLIQLKCENLKEK ::::..::::::::::: :::::::::..: gi|557 RRLHECQESLQCCKGKCADQEHTIRELQGQVDGNHNLLTKLSLEEENCLIQLKCENLQQK 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA1 LEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK ::::::::::::::::.::::::::.:..:::.::::::.::::::::::::::.::.:: gi|557 LEQMDAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQKVAEEIEK 380 390 400 410 420 430 100 110 120 130 140 150 mKIAA1 MSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNES ::::: ::::::::::.::::::::::::: :::.:.::: .::::.:.::::::..::: gi|557 MSSRESALQIKILDLETELRKKNEEQNQLVCKMNSKAQHQEVCLKEVQNSLEKSENQNES 440 450 460 470 480 490 160 mKIAA1 IKNYLQFLQISYVTMFR ::::::::. :::::: gi|557 IKNYLQFLKTSYVTMFE 500 510 167 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 07:40:19 2009 done: Fri Mar 13 07:44:33 2009 Total Scan time: 606.980 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]