FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0163.ptfa, 466 aa
 vs ./tmplib.26680 library

1768551 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.3923+/-0.00616; mu= -2.6806+/- 0.408
 mean_var=221.0243+/-52.823, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0863

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4142  ( 1639 res)   mpm06020                  (1639)  254   45 6.2e-05


>>mKIAA4142  ( 1639 res)   mpm06020                       (1639 aa)
 initn: 273 init1: 207 opt: 254  Z-score: 180.9  bits: 44.6 E(): 6.2e-05
Smith-Waterman score: 254;  37.607% identity (40.741% ungapped) in 117 aa overlap (3-114:1260-1372)

                                           10        20        30  
mKIAA0                             MVPKADSGAFLLLFLLVLTVTEPLRPELRCNP
                                     :. .  . :.:.  .::  ::  :   :.:
mKIAA4 EVSLEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEP--PT--CSP
    1230      1240      1250      1260      1270      1280         

             40        50        60        70         80           
mKIAA0 GQFACHGGTIQCIPLPWQCDGWPTCEDKSDEADCPEVTGEARPYGK-ETVDLR---QGRA
        ::::  : :.:::  :.:::.: : :.:::  ::  ..   : .. . ::::   .:.:
mKIAA4 DQFACTTGEIDCIPGAWRCDGFPECADQSDEEGCPVCSASQFPCARGQCVDLRLRCDGEA
        1290      1300      1310      1320      1330      1340     

       90       100        110       120       130       140       
mKIAA0 RGGDPTHFHTVN-VAQPVRFSSFLGKCPSGWHHYEGTASCYRVYLSGENYWDAAQTCQRV
          : .   . . :  : .:    :.:                                 
mKIAA4 DCQDRSDEANCDAVCLPNQFRCTSGQCVLIKQQCDSFPDCADGSDELMCEINKPPSDDIP
        1350      1360      1370      1380      1390      1400     




466 residues in 1 query   sequences
1768551 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:31 2006 done: Mon Mar 27 10:13:32 2006
 Scan time:  0.670 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]